Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGgtaatgatgttattctaccaggtcatcatagcttgcttgcaaattggtcggccgacttgctgtttttaaaagaattggttggttggctggtttgctgatcgtaattgtatgtgtaatgctgaaatttacttgtttgttttcacgccaaattag

Basic information

species Glycine max
transcript GLYMA07G30150.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 5'ss of exon 4
GGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGgtaatgatgttattctaccaggtcatcatagcttgcttgcaaattggtcggccgacttgctgtttttaaaagaattggttggttggctggtttgctgatcgtaattgtatgtgtaatgctgaaatttacttgtttgttttcacgccaaattag
||| |||||||| || || |||||||| || ||  | || || ||||| || || ||||||   ||||||||||| |||||||| |||||||| |||||||||         |||||  |    | |||           | ||||      |  ||||   || ||    || ||   | ||   ||    || | ||   |||  | | |                                         
GGACATCATGGACAGGGGCACTGATGCTCGTAACTTTTTACTGGGAAATGTGATCCCCCTCAAGCTTGGTTATGTAGGTGTTGTAAATCGTAGCCAAGAGgtacc-------ttctaagacaataccatgaaccttcattagattgacta-tcatcttgaatttcttcttcgagttccatagt---ctcacatgat-atgacaatgtttttt-----------------------------------------

upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
GGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGgtaa-tgatgttattctaccaggtcatcatagcttgcttgcaaattggtcggccgacttgctgtttttaaaagaattggttggttggctggtttgctgatcgtaattgtatgtgtaatgctgaaatttacttgtttgttttcacgccaaattag
|||||| ||||| |||||||||||||| |||||||   | || ||||||   ||||| || |||||||| || || || ||||| |||||||||||||||||||    |||| ||| |  |  | |     | || |||   |  |     |      | ||    |||  ||   ||     ||  ||  |||  || | |                                                    
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccactt--ctacttttgtgcttg----------------------------------------------------

upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
GGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGgtaatgatgttattctaccaggtcatcatagcttgcttgcaaattggtcggcc---gacttgctgtttttaaaagaattggttggtt-ggctggtttgctgatcgtaattgtatgtgtaatgctgaaatttacttgtttgttttcacgccaaattag
||| || ||||| |||||||| |||||||| ||| | ||||| |||||||| |||||||| |||||||||||  | |||||||||||||||||||||||||||||  ||  ||| |    |||  | | || |   || | | ||   |  |    ||  || |   |||     |       |||  || ||  || ||                                                         
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgt--ggtagtgaaagataattttctatttatacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg-------------------------------------------------------

upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ15047 (Selaginella moellendorffii), 5'ss of exon 4
GGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGgtaatg-atgttattctaccaggtcatcatagcttgcttgcaaattggtcggccgacttgctgtttttaaaagaattggttggttggctggtttgctgatcgtaattgtatgtgtaatgctgaaatttacttgtttgttttcacgccaaattag
 ||||||||||| ||||| |||||||| || ||  |  | || || |  ||||||||| | || ||||||||  ||||||| || ||||||||||||||||||  | ||| | ||||    | |  |||  |   |         |  ||  |    |||| |                                                                                           
TGATATCATGGACAGAGGCACTGATGCTCGCAACTTCCTTCTTGGGAGTGTTATTCCCTTACGCCTTGGTTACATTGGTGTCGTTAATCGTAGTCAAGAGgtagggcatgct-ttctg--ggtttgtcaaggagcgtcattggtct--tcttcaattttgcag-------------------------------------------------------------------------------------------

upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ37641 (Selaginella moellendorffii), 5'ss of exon 4
GGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGgtaatgatgttattctaccaggtcatcatagcttgcttgcaaattggtcggccgacttgctgtttttaaaagaattggttggttggctggtttgctgatcgtaattgtatgtgtaatgctgaaatttacttgtttgttttcacgccaaattag
 ||||||||||| ||||| |||||||| || ||  |  | || || |  ||||||||| | || ||||||||  ||||||| || ||||||||||||||||||  |    || | |   || |  |||  |   |         |  ||  |    |||| |                                                                                           
TGATATCATGGACAGAGGCACTGATGCTCGCAACTTCCTTCTTGGGAGTGTTATTCCCTTACGCCTTGGTTACATTGGTGTCGTTAATCGTAGTCAAGAGgtagggca--tactttctgagtttgtcaaggagcgtcattggtct--tcttcaattttgcag-------------------------------------------------------------------------------------------