Sequence
atgc intronic sequence ATGC exonic sequenceGGCCAATGGAGCTTTGGTCCGTGTTCTGATTCACACAGATGTTACAAAGTATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAGgtaggcagcatattcatcatgttctttattttcttttgtacacaactgctactttttttatattgcaaacttaaatttcacaaaacctcttgcatattgacaaaaatcttatgacagaatatctttatttatatatatattttttttag
Basic information
species | Glycine max |
transcript | GLYMA07G30050.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G30050.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0017g00490.t01 (Vitis vinifera), 5'ss of exon 3
GGCCAATGGAGCTTTGGTCCGTGTTCTGATTCACACAGATGTTACAAAGTATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAGgtaggcagcatattcatcatgttctttattttcttttgtacacaactgctacttt---ttttatattgcaaacttaaatttcacaaaacctcttgcatattgacaaaaatcttatgacagaatatctttatttatatatatattttttttag
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GGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACAAGGGAAAGgtatgctgt-tgttcacactaaaatttctttttcttttcttaagtctggtcacatgaatttaattcttggtacattatttttaca------ctttaaaactaacatcagtcttataattgaatat--------gcataaatcttgttctcag
upper sequence: GLYMA07G30050.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ11673 (Selaginella moellendorffii), 5'ss of exon 4
GGCCAATGGAGCTTTGGTCCGTGTTCTGATTCACACAGATGTTACAAAGTATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAGgtaggcagcatattcatcatgttctttattttcttttgtacacaactgctactttttttatattgcaaacttaaatttcacaaaacctcttgcatattgacaaaaatcttatgacagaatatctttatttatatatatattttttttag
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GGCTAACGGGCAGCTCGTCCGAGTTCTCATTCACACCGATGTGACCAAGTACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAGgtaatcgaaa-----acaaaaatgtcgagtttcaatt-caaacctttgggccattttcttttttccag---------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192300573|gb|FG987940.1|FG987940EST: ATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAG ATTTACAAAGTTCCAGCAACAGATGTTGAAGCACTGAAGTCACCATTAATG
genomic: ATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAGgtaggcagca ... ttttttttagATTTACAAAGTTCCAGCAACAGATGTTGAAGCACTGAAGTCACCATTAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCCAATGGAGCTTTGGTCCGTGTTCTGATTCACACAGATGTTACAAAGTATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAGgtaggcagcatattcatcatgttctttattttcttttgtacacaactgctactttttttatattgcaaacttaaatttcacaaaacctcttgcatattgacaaaaatcttatgacagaatatctttatttatatatatattttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG