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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttactcttacaataggtataatgagttgctgacttgaatgtctatttatcttatttaataaag

Basic information

species Glycine max
transcript GLYMA07G29500.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G29500.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G081915_T02 (Zea mays), 5'ss of exon 3
GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttactcttacaataggtataatgagttgct---gacttgaatgtcta---tttatcttatttaataaag------
|| || ||||| ||||||||||| ||||||||||| |||||||| ||| | ||||||| ||  ||     ||||| |  |  | | |||| |  |  |   ||   ||||   |||| |  ||| ||   |   |  | |||             
GCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATGgtacgtatattgtttttcttt-gcttccaatgttactactgtcaatctgtactgctctggactggtctgtttaaaatcgcttctgtttttctgcctacctg

upper sequence: GLYMA07G29500.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G081915_T01 (Zea mays), 5'ss of exon 3
GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttactcttacaataggtataatgagttgct---gacttgaatgtcta---tttatcttatttaataaag---------------
|| || ||||| ||||||||||| ||||||||||| |||||||| ||| | ||||||| ||  ||     ||||| |  |  | | |||| |  |  |   ||   ||||   |||| |  ||| ||   |   |  | |||                      
GCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATGgtacgtatattgtttttcttt-gcttccaatgttactactgtcaatctgtactgctctggactggtctgtttaaaatcgcttctgtttttctgcctacctgttcgtcaag

upper sequence: GLYMA07G29500.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G171435_T02 (Zea mays), 5'ss of exon 4
GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttactcttacaataggtataatgagttgctgacttgaat---gtctatttatcttatttaataaag--------
|| |||| ||||||||||||||| || ||||| || |||||||| ||| ||||||||  ||  |     ||  |    | ||  || |   || | |||  |    |  |  | || ||   |   |  |  ||| |||| |            
GCTCGCTACTTCTTCCAACAACTCATTTCAGGAGTAAGCTACTGCCATTCAATGgtat-tagttgttatataatggcacatttttcatcatattgttattgtttactcataccatgcattgagctgagctgccttttttattcttattttcaag

upper sequence: GLYMA07G29500.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 4
GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttactcttac----------------aataggtataatgagttgctgacttgaatgtctatttatcttatttaataaag
||||| |||||||||||||||||| ||||||| || |||||||||||||| ||||||   ||  |     | ||  | ||| ||   |                  || |  |  | |  |    | | ||| || ||   || | ||  ||  | |||
GCACGTTTCTTCTTCCAACAACTTGTATCAGGAGTCAGCTACTGTCATGCGATGgtattcaaacttttagttttctgccttaacctctgttttattatttgcctgaaaaaaatgaactaggcgattaagttggatttcatgttgtatttctttttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207843753|gb|GD813924.1|GD813924
EST:     GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG                         CAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
genomic: GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagt ... tttaataaagCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
EST: gi|18038723|gb|BM307017.1|BM307017
EST:     GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG                         CAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
genomic: GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagt ... tttaataaagCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
EST: gi|208275163|gb|GE069775.1|GE069775
EST:     TTCTTCTTCCAACAACTTTATATCAGGGGTTAGCTACTGTCATGCAATG                         CAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
genomic: TTCTTCTTCCAACAAC-TTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagt ... tttaataaagCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
EST: gi|26059786|gb|CA802700.1|CA802700
EST:     GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG                         CAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
genomic: GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagt ... tttaataaagCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
EST: gi|24205189|gb|BU964442.1|BU964442
EST:     GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG                         CAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
genomic: GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagt ... tttaataaagCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
EST: gi|254328432|gb|GR835397.1|GR835397
EST:     GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG                         CAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT
genomic: GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagt ... tttaataaagCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGT