1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCGATGATGAACAGATTCAAAAGAAAAGCCCTTAGGgttagttcactgcatctctggtgatatcttaagccattgcttttacagtatgtcagagctaagattttatatttgtatacag
species | Glycine max |
transcript | GLYMA07G18310.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCTTAAGCAATTTTCGATGATGAACAGATTCAAAAGAAAAGCCCTTAGG GTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATGEST: gi|7284239|gb|AW596835.1|AW596835
genomic: GGCTTAAGCAATTTTCGATGATGAACAGATTCAAAAGAAAAGCCCTTAGGgttagttcac ... ttgtatacagGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATG
EST: GGCTTAAGCAATTTTCGATGATGAACAGATTCAAAAGAAAAGCCCTTAGG GTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATGEST: gi|51344853|gb|CO985586.1|CO985586
genomic: GGCTTAAGCAATTTTCGATGATGAACAGATTCAAAAGAAAAGCCCTTAGGgttagttcac ... ttgtatacagGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATG
EST: ATGATGAACAGATTCAAAAGAAAAGCCCTTAGG GTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCNNNGATATG
genomic: ATGATGAACAGATTCAAAAGAAAAGCCCTTAGGgttagttcac ... ttgtatacagGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCGATGATGAACAGATTCAAAAGAAAAGCCCTTAGGgttagttcactgcatctctggtgatatcttaagccattgcttttacagtatgtcagagctaagattttatatttgtatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA