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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTTTCAAAGAAGACTCGCCTTATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgacttcaatctaattgctatttaattattaaaatttcaacaaaaagaaaaaacagataactatatgctttagatttctgcacttgggtcaatact...

Basic information

species Glycine max
transcript GLYMA07G18210.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g02260.t01 (Vitis vinifera), 5'ss of exon 4
AGCCTTTCAAAGAAGACTCGCCTTATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgacttcaatctaattgc-tatttaattattaaaatttcaacaaaaagaaaaaacagataactatatgctttagatttctgcacttgggtcaatact
||||||||| || | || ||| |||| ||||| |||||||||||| |||| |||||||||||    |  ||   |   || | | |  || ||    |||||  ||| |    ||| |   |  || | |     ||    | |||  |      |||| |  | |         
AGCCTTTCAGAGCAAACACGCGTTATCTTTCTTAGTGCTCCTCCTATCAACGAGGCACAAATCCGCGAGACACTGAGgtgtcctaatgctgatactgtatttgcttacttgg-ttttatgtagtagtatatttcaattctaaaatggctacttcatctgaaactag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193492280|gb|FK453962.1|FK453962
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|193644885|gb|FK588747.1|FK588747
EST:     CTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: CTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|151406549|gb|EV276364.1|EV276364
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|193561523|gb|FK518572.1|FK518572
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTANGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATNTTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|298171010|gb|HO016042.1|HO016042
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|151398511|gb|EV268382.1|EV268382
EST:     ATATTTCTCAGTGCTCCTCCCGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACTAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|193553650|gb|FK508607.1|FK508607
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|7591301|gb|AW707037.1|AW707037
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|58022084|gb|CX708825.1|CX708825
EST:     ATATTTNTCAGTGCTCCTCCTGTCAATGAGCCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|15815106|gb|BI787381.1|BI787381
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|298169237|gb|HO020597.1|HO020597
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|31468536|gb|CD410564.1|CD410564
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACT-GGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|151404433|gb|EV274247.1|EV274247
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|192327728|gb|FK022035.1|FK022035
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|192327729|gb|FK022036.1|FK022036
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|151411903|gb|EV281714.1|EV281714
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|15813377|gb|BI785652.1|BI785652
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|208031306|gb|GD831640.1|GD831640
EST:     TCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: TCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|151394124|gb|EV263995.1|EV263995
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|298189599|gb|HO038002.1|HO038002
EST:     ATATTTCTCAGTGCTCCTCCCGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|15812713|gb|BI784988.1|BI784988
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|13478430|gb|BG507910.1|BG507910
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|193663264|gb|FK604052.1|FK604052
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATNTTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|193675315|gb|FK619105.1|FK619105
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAAATATT
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAA-TATT
EST: gi|19053011|gb|BM731678.1|BM731678
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
EST: gi|8669315|gb|BE190422.1|BE190422
EST:     ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAG                         TGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC
genomic: ATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgactt ... ctttaaccagTGTGCCACTGGGGCAGCGATTAAGGAACAACGAATCATGTCAAAAATATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCTTTCAAAGAAGACTCGCCTTATATTTCTCAGTGCTCCTCCTGTCAATGAGGCACAAATTTATGGAACCAGgttttgacttcaatctaattgctatttaattattaaaatttcaacaaaaagaaaaaacagataactatatgctttagatttctgcacttgggtcaatact

- - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaaa