1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGTAATGATTCTACTCTTCCAAATCCAAATGGCCTTGGTCCTCACGTACCTGTAGAGGAATACAAGGAAAATATGAGAAAGATTGCTATCCATATGAAGgtaaacattcgcactagagtaactttttctgtcttaatcattactagtactatttatcatgtggaagaaatccttcctcattcaagaaattcttgagcagcgtgtgcttaaaacttgatcttatgttgatggttgctaagtttgatacaaatcctaatgattggcag
species | Glycine max |
transcript | GLYMA07G18200.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTAGAGGAATACAAGGAAAATATGAGAAAGATTGCTATCCATATGAAG TGCCTTTCTGAGAAGACTCGCACAATATTTCTCACTACTCCTCCCATCAATEST: gi|38191127|gb|CF920333.1|CF920333
genomic: CTGTAGAGGAATACAAGGAAAATATGAGAAAGATTGCTATCCATATGAAGgtaaacattc ... tgattggcagTGCCTTTCTGAGAAGACTCGCACAATATTTCTCACTACTCCTCCCATCAAT
EST: TGCTATCCATATGAAG TGCCTTTCTGAGAAGACTCGCACAATATTTCTCACTACTCCTCCCATCAATEST: gi|254330811|gb|GR842076.1|GR842076
genomic: TGCTATCCATATGAAGgtaaacattc ... tgattggcagTGCCTTTCTGAGAAGACTCGCACAATATTTCTCACTACTCCTCCCATCAAT
EST: TGTAGAGGAATACAAGGAAAATATGAGAAAGATTGCTATCCATATGAAG TGCCTTTCTGAGAAGACTCGCACAATATTTCTCACTACTCCTCCCATCAAT
genomic: TGTAGAGGAATACAAGGAAAATATGAGAAAGATTGCTATCCATATGAAGgtaaacattc ... tgattggcagTGCCTTTCTGAGAAGACTCGCACAATATTTCTCACTACTCCTCCCATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTAATGATTCTACTCTTCCAAATCCAAATGGCCTTGGTCCTCACGTACCTGTAGAGGAATACAAGGAAAATATGAGAAAGATTGCTATCCATATGAAGgtaaacattcgcactagagtaactttttctgtcttaatcattactagtactatttatcatgtggaagaaatccttcctcattcaagaaattcttgagcagcgtgtgcttaaaacttgatcttatgttgatggttgctaagtttgatacaaatcctaatgattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA