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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTCGAGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTATAAGgttaacccctaattattgtatcagaagttctaatagcaaatattacctgttcatgtctgaatatctactttttgaactcacag

Basic information

species Glycine max
transcript GLYMA07G18140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18140.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGATTCGAGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTATAAGgtta---------acccctaa-ttattg--tatcagaa----gttctaatagcaaatattacctgttcatgtctgaatatctactttttgaactcacag-
|||||  ||||  ||||||||||||| ||||||||||| |||||||| | ||| ||||| |         | |  ||  ||||||  |||  | |    || ||||    |||||  |    ||  | |   | | | ||  |  |   |  | |  
GTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTATGAGAGTTACAAGgtgagtttgtgtcatctatagcttattggctattgggattatgtactaaagagaaatagaaatgattgttataaaattctgtagctacttgtcctagaaa

upper sequence: GLYMA07G18140.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 4
GTGATTCGAGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTATAAGgtta----------acccctaattattgtatcagaagttctaatagcaaatattacctgttcatgtctga-atat-ctactttttgaactcacag------------
||||| ||  |  ||||||||||||| |||||||| ||||||||||||| ||| ||||| |          | |  |||  ||  | |   | ||| | |||    || | |    ||  ||| ||| | || ||  |||||    | |||             
GTGATACGTATCATACCTTACAGTGCCGTCCAGCTGTTTGCTTATGAAACTTACAAGgtaatggtggcgccatctttaagcatcatttagcatgttgttata-tggatctcaatgattagtgtttgagacattctgattttttgttttacacatgaatttctag