Sequence
atgc intronic sequence ATGC exonic sequenceGTCATGACCTGTCGACCACGCTCAGATCTTTATGTCAATCTTCCAGCTCTGCGCAAATTAGATAACATGCTTCTTgtaagttttacagcattgaataatgcacaccacgtatcactccagtttcatgaactattccattctaatttttggtattttcacag
Basic information
species | Glycine max |
transcript | GLYMA07G16790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G16790.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCATGACCTGTCGACCACGCTCAGATCTTTATGTCAATCTTCCAGCTCTGCGCAAATTAGATAACATGCTTCTTgtaagttttacagcattgaataatgcacaccacgtatcactccag---tttcatgaacta----ttccattctaatt--tttggtattttcacag
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ATAATGACTTGCAGACCAAGATCAGATCTTTATGTTAACCTCCCAGCTCTCAGGAAACTAGATAACATGCTTCTTgtaagaacaagtg-atctcttttcgtcttcccagtttctctataggtattttaagcagcaaaggtctcattcttattcatcttccatctttgcag
upper sequence: GLYMA07G16790.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g01390.t01 (Vitis vinifera), 5'ss of exon 4
GTCATGACCTGTCGACCACGCTCAGATCTTTATGTCAATCTTCCAGCTCTGCGCAAATTAGATAACATGCTTCTTgtaagttttacagcattgaataatgcacaccacgtatcactccagtttcatgaactattccattctaatttttggtat-tttcacag
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GTCATGACTTGCAGGCTCCGAGCAGATCTTTATGCTAATCTCCCAGCTCTGCGTAAATTAGATGACATGCTTATTgtaaggtt--cagaaataattgtctcgcagtagatttc-ctatagtttcaagag--gtccctctttaactcataacccatttcccag
upper sequence: GLYMA07G16790.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g01380.t01 (Vitis vinifera), 5'ss of exon 4
GTCATGACCTGTCGACCACGCTCAGATCTTTATGTCAATCTTCCAGCTCTGCGCAAATTAGATAACATGCTTCTTgtaagttttacagcattgaataatgcacaccacgtatcactccagtttcatgaactattccattctaatttttggtat-tttcacag
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GTCATGACTTGCAGACCCCGATCAGATCTTTACATTAATCTCCCAGCTCTGCGTAAATTAGATAACATGCTACTTgtaaggttcactaaaactcat--ttcctagtagac-tgcttctagattcatga----tgtcattctaactagaagactatttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15000271|gb|BI321085.1|BI321085EST: CTTTATGTCAATCTTCCAGCTCTGCGCAAATTAGATAACATGCTTCTT GAAATTCTAGATAGTTTTGTCAATACAGAGTTCTGGTATATAGACCAAGGG
genomic: CTTTATGTCAATCTTCCAGCTCTGCGCAAATTAGATAACATGCTTCTTgtaagtttta ... attttcacagGAAATTCTAGATAGTTTTGTCAATACAGAGTTCTGGTATATAGACCAAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATGACCTGTCGACCACGCTCAGATCTTTATGTCAATCTTCCAGCTCTGCGCAAATTAGATAACATGCTTCTTgtaagttttacagcattgaataatgcacaccacgtatcactccagtttcatgaactattccattctaatttttggtattttcacag
- - - - - - - - - - - - - - - - - - - - - CAGCTC