1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTCTATAACGGCACAACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggacttttatttatgtttataacttttgtacatctaattttttttatagaggcttaacctttgatccatttactttaacttttccaaaatatgtat...
species | Glycine max |
transcript | GLYMA07G14540.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|298173661|gb|HO016997.1|HO016997
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|193567957|gb|FK524294.1|FK524294
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|254327987|gb|GR834952.1|GR834952
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|209709339|gb|BW678883.1|BW678883
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|33388612|gb|CA851819.1|CA851819
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|193645503|gb|FK590443.1|FK590443
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: GAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|254341868|gb|GR853005.1|GR853005
genomic: GAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAG-TGTTTTGGATGCCAAGGCACEST: gi|7925973|gb|AW831999.1|AW831999
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|192328757|gb|FK022543.1|FK022543
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAGCAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|120491272|gb|EH219439.1|EH219439
genomic: ATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|13479325|gb|BG508668.1|BG508668
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|254327121|gb|GR836730.1|GR836730
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|209702366|gb|BW656341.1|BW656341
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|18040211|gb|BM308505.1|BM308505
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|298195498|gb|HO043889.1|HO043889
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|298186346|gb|HO036979.1|HO036979
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|208204724|gb|GE003651.1|GE003651
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCTAGGCACEST: gi|298172387|gb|HO019427.1|HO019427
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|192322850|gb|FK014781.1|FK014781
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATACCAAGGCACEST: gi|163923429|gb|EH038356.1|EH038356
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|18732460|gb|BM527057.1|BM527057
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACEST: gi|26058372|gb|CA801286.1|CA801286
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
EST: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGG GAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
genomic: ACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggactt ... gataaatcagGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTCTATAACGGCACAACAAAGAAACTATCTCTTTCTAGAAACGTATTCTGCTCAAAATGTAAAGGgtatggacttttatttatgtttataacttttgtacatctaattttttttatagaggcttaacctttgatccatttactttaacttttccaaaatatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA