Sequence
atgc intronic sequence ATGC exonic sequenceAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaacagatgattatgccatattgtcattacaatataatagcatggaagaaaaaaaacatttaatctattaaactcaaacaaacaaacatgccttggata...
Basic information
species | Glycine max |
transcript | GLYMA07G12660.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G12660.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G44530.2 (Arabidopsis thaliana), 5'ss of exon 4
AATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaacagatgattatgccatattg--tcattacaatataa---tagcatggaagaaaaaaaacatt-taatctattaaactcaa-acaaacaaacatgccttggata-
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GATTACACAGTCTGGTGCAGACCGTGTCCTTGCTTGTGATCTTCACTCCGGACAGTCTATGGGCTACTTTGATATTCCAGTCGATCATGTTTATGGCCAGgtagaaaaaagtttttcttaaatgactcctctgagcatcaagttcctttttgtgaaaatagactttcttatgtcttcttttccttgtgctttaatat-tcatgaacag
upper sequence: GLYMA07G12660.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
AATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaaca-gatgattatgccatattgtcattacaatataatagcatggaagaaaaaaaacatttaatctattaaactcaaacaaacaaacatgccttggata-
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CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgatagcttctagtggtcaatgtg-tatgatcagatttcaaactgatgctattggggttcttcca-tgttatacatcagcatgactttggtgt
upper sequence: GLYMA07G12660.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S152_123V6.1 (Physcomitrella patens), 5'ss of exon 4
AATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaacagatgattatgccatattgtcattacaatataatagcatggaagaaaaaaaacat-ttaatctattaaactcaaacaaac---aaacatgccttggata
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AATTACTGAAGCTGGGGCAAACCGTGTGCTCACTTGTGACCTGCACTCTGGCCAGTCGATGGGCTACTTTGATATTCCCGTTGACCATGTTTATGGCCAAgtaa--gttatctat-ctgaattacctgaaagttatga-agcctaattcgttgtagacatgtttcacaattccattgcggctgctcttagctagcttcttgatg
upper sequence: GLYMA07G12660.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ24123 (Selaginella moellendorffii), 5'ss of exon 4
AATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaacagatgattatgccatattgtcattacaatataatagcatggaagaaaaaaaacatttaatctattaaactcaaacaaacaaacatgccttggata
|| || || ||||||||||||||||| ||||| ||||| || || ||||| || ||||| || || |||||||| |||||||| || |||||||||||| || | | |||||| | | | | | ||| | | |||| | || || || ||
TATAACTGAGGCAGGTGCAAATCGTGTTCTTGCGTGTGATCTTCACTCTGGACAAAGTATGGGGTACTTCGATATTCCTGTTGATCACGTCTATGGACAGgta-----tg--tgcgtcatatttttctca----acgtcaccattcccgtataaaatctctttg-ctctttcttgcag----------------------
upper sequence: GLYMA07G12660.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ35181 (Selaginella moellendorffii), 5'ss of exon 4
AATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaacagatgattatgccatattgtcattacaatataatagcatggaagaaaaaaaacatttaatctattaaactcaaacaaacaaacatgccttggata
|| || || ||||||||||||||||| ||||| |||||||| || ||||| || ||||| || || |||||||| |||||||| || |||||||||||| || | | |||||| | | | | | ||| | | ||||| | | || || ||
TATAACTGAGGCAGGTGCAAATCGTGTTCTTGCGTGTGACCTTCACTCTGGACAAAGTATGGGGTACTTCGATATTCCTGTTGATCACGTCTATGGACAGgta-----tg--tgcgtcatatttttctca----acgtcaccattcccgtacaaaaatctctttgctctttcttgcag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254348826|gb|GR852505.1|GR852505EST: GGCAGTCCATGGGCTATTT-GATATTCCAGTTGATCATGTGTATGGACAG TCTGTTATACTTGATTACCTTGCCAGCAA
genomic: GGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaacagatg ... ccactgtcagTCTGTTATACTTGATTACCTTGCCAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaacagatgattatgccatattgtcattacaatataatagcatggaagaaaaaaaacatttaatctattaaactcaaacaaacaaacatgccttggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa