Sequence
atgc intronic sequence ATGC exonic sequenceCAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCGGAAAGgtatgtattgaattatacaatgccatgagtttggttaaacaacttactgactgcttgttgcaatgttgcccctttgtacagtttttattttattttttcataatcatggattttattttgcttctgttaatttttgtgattag
Basic information
species | Glycine max |
transcript | GLYMA07G11880.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G11880.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G55150.1 (Arabidopsis thaliana), 5'ss of exon 4
CAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCGGAAAGgtatgtattgaattatacaatgccatgagtttggttaaacaacttactgactgcttgttgcaatgttgcccctttgtacagtttttattttattttttcataatcatggattttattttgcttctgttaatttttgtgattag
|| |||||||| ||||||||||| |||| || | ||||||| || ||||| ||||||||||||||||| || ||||| ||||||||||||| |||||||| |||| ||| ||| | ||| | || | | | | || || || ||||| || || || | || || | || || | |
CAGCAAGAGGCATCTAAATTTGGTTCATCCTCAAAAATTAAGACCACTTGCATTTATGGTGGGGTTCCAAAAGGGCCTCAAGTGCGTGATCTCCAGAAAGgta-------aattgc-------------tttagttcagtgcctttcacgacatttctggaactattagtttttctta--attttttgttgatcattc--tgattgtgattgttggcctgtggatatag--------------
upper sequence: GLYMA07G11880.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g02100.t01 (Vitis vinifera), 5'ss of exon 4
CAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCGGAAAGgtatgta----------ttgaatta--tacaatgccatgagtttggtt--aaacaact-tactgactgcttgttgcaatgttgcccctttgtacagtttttatt----ttatt-ttttcataatcatggat--------tttattttgctt-ctgttaatttttgtgattag--------
|||||||| || ||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||| ||||||||||| | |||||||| | |||||||| || |||| | | || | | || || | || | |||| | | || | | || | | | | | | | | | | ||| | ||||| ||| || |||| | | |||||||| ||| |||||| || || ||
CAACAAGAAGCAGCTAAATTTGGTGCATCATCGAGGATTAAGAATACCTGCATACATGGTGGAGTTCCTAAGGGACCTCAAATTCGTGATCTTCAGAAAGgtaggtgattatcaggtttgaggtgactccagttacttgttttagatttaagacaattgtgctaattcattatgatgttcataagcttgtatcctgctattactactattattacttttgtactcattgttgccgcttttttatttttcttattgttaaacttcttgttttctggctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8401669|gb|BE057303.1|BE057303EST: CATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAG GTGTCGAAATTGTAATTGCCACTCCAGGAAGGTTAATTGATATGCTTGAGT
genomic: CATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCGGAAAGgtatgtattg ... ttgtgattagGTGTCGAAATTGTAATTGCCACTCCAGGAAGGTTAATTGATATGCTTGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCGGAAAGgtatgtattgaattatacaatgccatgagtttggttaaacaacttactgactgcttgttgcaatgttgcccctttgtacagtttttattttattttttcataatcatggattttattttgcttctgttaatttttgtgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG