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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGAAGATGAGATGGGACTCAACATAAGGAAAGTTAAGCCTTCAAGTTCAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgtaaaattactctttaccttcactagctttacatgcaatgcaggaagttttgagttaaatatatatgtttttatttcttaaaaatattccga...

Basic information

species Glycine max
transcript GLYMA07G10930.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22926968|gb|BU544107.1|BU544107
EST:     CAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG                         GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: gi|298171695|gb|HO021287.1|HO021287
EST:     CAAATGACGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG                         GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: gi|9986003|gb|BE660009.1|BE660009
EST:     CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG                         GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: gi|298192133|gb|HO036215.1|HO036215
EST:     CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGCGTTTGTCAG                         GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: gi|298173103|gb|HO020087.1|HO020087
EST:     CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG                         GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC