Sequence
atgc intronic sequence ATGC exonic sequenceTGAGTTTGTGTACAGTGTCACAGATGAAGCTCTTGAAAGGATGAACTATCTCCATGCAGCAATTACTGAAACTCTCAGACTTTATCCTGCAGTTCCCGTGgtaaggttatattaaattcccaagattgatttagggcctatttgtataggcgtattcaaaagcacttttaggtgaaaaaaataagaagaaaaaaatgaaa...
Basic information
species | Glycine max |
transcript | GLYMA07G09160.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g01670.t01 (Vitis vinifera), 5'ss of exon 4
TGAGTTTGTGTACAGTGTCACAGATGAAGCTCTTGAAAGGATGAACTATCTCCATGCAGCAATTACTGAAACTCTCAGACTTTATCCTGCAGTTCCCGTGgtaaggttatattaaattcccaagattgatttagggcctatttgtataggcgtattcaaaagcacttttaggtgaaaaaaataagaagaaaaaaatgaaa-----
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CGAGTTTGCAGCCAGTGTTACTGAAGAAGCTCTGGAGAACATGCAGCATCTCCATGCTGCTATAACTGAGACTCTACGACTCTATCCTGCAGTTCCTGTGgtaatga-gcattgtgattttgtagtcattc----gcacatacatatgcatagatttgaagctttcctggttttgaattaactcccaacaataactggtttttca
upper sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g01690.t01 (Vitis vinifera), 5'ss of exon 4
TGAGTTTGTGTACAGTGTCACAGATGAAGCTCTTGAAAGGATGAACTATCTCCATGCAGCAATTACTGAAACTCTCAGACTTTATCCTGCAGTTCCCGTGgtaaggttatattaaattcccaagattgatttagggcctatttgtataggcgtattcaaaagcacttttaggtgaaaaaaataagaagaaaaaaatgaaa------
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CGAGTTTGCAGCCAGTGTTACTGAAGAAGCTCTGGAGAAGATGCAGTATCTCCATGCTGCTATAACTGAGACTCTACGACTCTATCCTGCAGTTCCTGTGgtaatga-gcattgtgattttgtagtc-attca---cacatacatatacatagatttgaa-gctttcctggttttgaattaagtcccaacaataattggtttttcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213602867|gb|DB978170.1|DB978170EST: CCATGCAGCAATTACTGAAACGGACAGACTTGTA-CCTGCAGTTCCCGTT GATGCAAAGATTTGTTTTTCTGATGATACACTACCTGATGGATATAGTGTA
genomic: CCATGCAGCAATTACTGAAACTCTCAGACTT-TATCCTGCAGTTCCCGTGgtaaggttat ... tttcttgcagGATGCAAAGATTTGTTTTTCTGATGATACACTACCTGATGGATATAGTGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGTTTGTGTACAGTGTCACAGATGAAGCTCTTGAAAGGATGAACTATCTCCATGCAGCAATTACTGAAACTCTCAGACTTTATCCTGCAGTTCCCGTGgtaaggttatattaaattcccaagattgatttagggcctatttgtataggcgtattcaaaagcacttttaggtgaaaaaaataagaagaaaaaaatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa