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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatattgttttttgcagtatttttataaatgtagttgttctttgctttactgttttcaggcttgttgattacttgtttgcttattgcaatattctttattcattccag

Basic information

species Glycine max
transcript GLYMA07G08320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08320.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 4
ACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatattgttttttgcagtatttttataaatgtagttgttctttgctttactgttttcaggcttgttgattacttgtttgcttattgcaatattctttattcattccag
||| |||| ||||||||||| || |||||||| |||||||| ||||| || |||||||||||| ||  | |   | |||   ||  ||  | |  | | |||  |||||  | |   |||||  | |  |    | ||  |||  ||||     | || |||   || | |||
ACAGTCTCCTACATGGCTGAGCGGGTGGTTGGCACTGGTTCCTTTGGGGTCGTTTTTCAGgtacttggaattgatcttgatatacctt-gtga--gcaattggcctttgggtaa---ttttccagataatattgttctcatttttttat----gttttattttgacaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193585663|gb|FK541189.1|FK541189
EST:     ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG                         GCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTT
genomic: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatat ... ttcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTT
EST: gi|193726623|gb|FK658591.1|FK658591
EST:     ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG                         GCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
genomic: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatat ... ttcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
EST: gi|208124691|gb|GD925145.1|GD925145
EST:     ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG                         GCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
genomic: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatat ... ttcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
EST: gi|193602745|gb|FK560226.1|FK560226
EST:     ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG                         GCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
genomic: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatat ... ttcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA