Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaataaaaaaaattcagtaatagcagggctgtctactataacagtatatataaagtatacagttctctgcaacttgtgctttaatgctattccaa...

Basic information

species Glycine max
transcript GLYMA07G07750.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07750.4 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g39580.1 (Oryza sativa), 5'ss of exon 2
ACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaataaaaaaaattcagtaatagcagggctgtctactataaca-gtatatataaagtatacagttctctgcaac---ttgtgcttta-atgctattccaa--------------------------------------------------------------
 ||||| ||||| || ||||||||| |||||||||| |||||||| ||    ||||||||||| |||||||| ||||| ||| | | |  |||  | |||||||| ||    | |    ||    | |     ||||  | || |||    |   ||  || | |    | | | || |   ||||| || | | |   |    |                                                              
GCCTGTGGATGGTAGATTTGAGCATATAGTTCTTTCCTGCAATGCCACAATGGACCATGCCATTATTTGGATCGAGAGGGAAGCACAAAAGGCGTTGGATgtaagaaaccgtatattgccaacctttgttt--ctgtggattacaacttacaagcatgtagcacaggcgtttttacatcccattgtggttgagacggcgtcgttagattcatcttgcaagttgcttgttaaatgtctgatggtgaccatggctgtgcatatgaacag

upper sequence: GLYMA07G07750.4 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G085939_T01 (Zea mays), 5'ss of exon 4
ACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaataaaaaaaattcagtaatagc--agggctgtctactataacagtatatataaagtatacagttctctgcaacttgtgctttaatgctattccaa
 || || ||||| || ||||||||  |||||||||| |||||||| ||  | ||||||||||| |||||||| ||||| ||  |||    |||| | ||||| ||      | ||  ||   |  |     ||   ||  |||| |   |   |  || ||       ||   || |   ||   |  | | || ||     
GCCGGTGGATGGTAGATTTGAGCACATAGTTCTTTCCTGCAATGCCACAGCGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGATgtgagtttcttacaatcttatatgcttttctagtcatgcttactctc-tatccttaatcaacctccttgtatcctactttttccccccttaggccatgttc-

upper sequence: GLYMA07G07750.4 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0046g02650.t01 (Vitis vinifera), 5'ss of exon 4
ACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaataaaaaaaattcagtaatagcagggctgtctacta-taac-agtatatataaagt--atacagttctctgca-acttgtgctttaatgctattccaa
|||||| |||||||||||||||||  |||| |||||||||||||  ||||| ||||||||||||||||||||||||| |||||||| |  |||| | ||||||||   | ||      |   |        |  | ||   || |||  |||  | | || ||  | |   || |    | || | ||| |  ||  | |     
ACCTGTGGATGGGAGGTTTGAGCACATAGTACTTTCTTGCAATGTGACTTCGGACCATGCCATCATTTGGATAGAGAAAGAATCCCAAAAGGCTTTTGATgtaagttttcaacttttcttgattgagttttgagtttcaggtagtaattagtgaaaacaatgttcaaatgattgttcttatacctctgcatgtatatttt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7795062|gb|AW780459.1|AW780459
EST:     CTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGAT                         TTAATGCGAGATAAAGATGAGCAGCATATGGAGATCCCAGAAGAGCAGAAG
genomic: CTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaata ... gttgcatcagTTAATGCGAGATAAAGATGAGCAGCATATGGAGATCCCAGAAGAGCAGAAG
EST: gi|10231249|gb|BE800065.1|BE800065
EST:     CAGACCATGCCATCATATGGATAGAGAGAGAATCCCGACGGGCTCTCAAT                         TTAATGCTAGATAAAGATGAGCAGCTTATGGAGATCCCAGAAGAGCAGAAG
genomic: CTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaata ... gttgcatcagTTAATGCGAGATAAAGATGAGCAGCATATGGAGATCCCAGAAGAGCAGAAG
EST: gi|22934119|gb|BU551258.1|BU551258
EST:     CTGACCATGCCATCATNNNGATAGAGAGAGAATCCCGACGGGCTCTCGAT                         TTAATGCGAGATAAAGATGAGCAGCATATGGAGATCCCAGAAGAGCAGAAG
genomic: CTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaata ... gttgcatcagTTAATGCGAGATAAAGATGAGCAGCATATGGAGATCCCAGAAGAGCAGAAG