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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCTGAGGAGGATGCCAAGGTTATAGTTTTGCAGATCCTAAGCGTAGTTGCATTTTGTCATCTTCAAGGTGTTGTGCACCGTGACTTGAAACCTGAGgtttgtgctttaaattatcatccatataataatttgtaatgataacatctagttctgtttttaatattacgaggattaattatatagaatatcaataatgttgattcttttttggagtttgcttttacag

Basic information

species Glycine max
transcript GLYMA07G05750.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05750.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G46700.1 (Arabidopsis thaliana), 5'ss of exon 4
GTATTCTGAGGAGGATGCCAAGGTTATAGTTTTGCAGATCCTAAGCGTAGTTGCATTTTGTCATCTTCAAGGTGTTGTGCACCGTGACTTGAAACCTGAGgtttgtgcttt---aaattatcatccatataataatttgtaatgataacatctagttctgtttttaatattacgaggat-taattatatagaatatcaataatgttgattcttttttggagtttgcttttacag
 ||  | ||||| ||||| ||||  || ||  | || || ||||  || ||| ||||||||||||| ||||| ||||||||||||||||| || || ||||| |||  ||    | |  |   ||| |||    |  |  | |   |  |   |  ||  |  | || | | |    |  |  ||  | ||                                           
ATACCCGGAGGATGATGCAAAGGCGATTGTCGTACAAATTCTAACTGTTGTTTCATTTTGTCATCTCCAAGGAGTTGTGCACCGTGACTTAAAGCCAGAGgtctgtttttacaaagaaaactttccctatctctacctccagtagcattacaca--tcattactaaacactcctgttaccttgttcaacag-------------------------------------------

upper sequence: GLYMA07G05750.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 4
GTATTCTGAGGAGGATGCCAAGGTTATAGTTTTGCAGATCCTAAGCGTAGTTGCATTTTGTCATCTTCAAGGTGTTGTGCACCGTGACTTGAAACCTGAGgtttgtgctttaa----attatcatccatata--ataatttgtaatgataacatct----------agttctgtttttaatattacgaggattaattat---atagaatatcaataat-gttgattcttttttggagtt-tgcttttacag
 ||  |||| || ||||| || |  || ||| | || ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| || || ||||||| | ||||      ||||   |  ||  |   | |      ||  ||    ||          ||| ||| |||   |  |   | | |||||| |   |    |||  ||||||   |||| || |||     |  |  |   ||||
ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgtttcttcttttgcttgattaatgttgatgaactgtgaccgactatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaattctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacag