1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGCCTGGTACAATTGATCAATCATGGAGTGATGCAGTTCCTCAACCTATTCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgattaatgttattaagtgaagcgagacaacactgaatgaaattttgtgtgctgtctttcagctattgttttctgccttttgtcatctttcaatt...
species | Glycine max |
transcript | GLYMA07G04890.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|207680064|gb|GD663678.1|GD663678
genomic: GGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|209709186|gb|BW657155.1|BW657155
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|58024454|gb|CX711195.1|CX711195
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|254348667|gb|GR852346.1|GR852346
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193588414|gb|FK544093.1|FK544093
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTATCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGG-AAGCTGTTCCEST: gi|254333513|gb|GR848431.1|GR848431
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCC
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193716511|gb|FK652529.1|FK652529
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|31307688|gb|CD392891.1|CD392891
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193324159|gb|FK288351.1|FK288351
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGG-AAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|151403869|gb|EV273679.1|EV273679
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|207703719|gb|GD686591.1|GD686591
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|209713306|gb|BW684393.1|BW684393
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|192314595|gb|FK008131.1|FK008131
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193530778|gb|FK484975.1|FK484975
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: GGGGGGCGACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|19935381|gb|BQ080411.1|BQ080411
genomic: GGGGGGC-ACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193321399|gb|FK286543.1|FK286543
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATT-GGGGGAAGCTGTTCCACCACCACGACAAATCCCTGEST: gi|208257276|gb|GE050923.1|GE050923
genomic: TCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193471392|gb|FK438509.1|FK438509
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: CTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|209699419|gb|BW664139.1|BW664139
genomic: CTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|207844541|gb|GD816588.1|GD816588
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|208222128|gb|GE020398.1|GE020398
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|207785304|gb|GD759055.1|GD759055
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGG-CACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGEST: gi|193449377|gb|FK416412.1|FK416412
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAG
EST: GGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|19935382|gb|BQ080412.1|BQ080412
genomic: GGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193325989|gb|FK292262.1|FK292262
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: CACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|17023070|gb|BM094104.1|BM094104
genomic: CACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|207695804|gb|GD677649.1|GD677649
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: GGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193462130|gb|FK425957.1|FK425957
genomic: GGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: GGGGGGCGACCTGCAGAAGCACCTGCCG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|209708217|gb|BW678587.1|BW678587
genomic: GGGGGGC-ACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|209702183|gb|BW664625.1|BW664625
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|58019522|gb|CX706264.1|CX706264
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGTGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|193475920|gb|FK441231.1|FK441231
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: CCTGGTGTCAACTGGGGGGCGACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|254336100|gb|GR841425.1|GR841425
genomic: CCTGGTGTCAACTGGGGGGC-ACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|192314596|gb|FK008132.1|FK008132
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|207752928|gb|GD725494.1|GD725494
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: CACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|58016477|gb|CX703219.1|CX703219
genomic: CACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGTGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|208339666|gb|GE139302.1|GE139302
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|208123422|gb|GD921384.1|GD921384
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGG-AAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|120529117|gb|EH257251.1|EH257251
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGEST: gi|24136637|gb|BU927147.1|BU927147
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCCTGGTACAATTGATCAATCATGGAGTGATGCAGTTCCTCAACCTATTCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgattaatgttattaagtgaagcgagacaacactgaatgaaattttgtgtgctgtctttcagctattgttttctgccttttgtcatctttcaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC