1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatatcttctcactcctgtgcatgacatataaatatatttattgatttccaacgttttgtgttccttacatgtataaatgatctatttggatttt...
species | Glycine max |
transcript | GLYMA07G04040.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTCGGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAA-G-- CAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAAEST: gi|21994611|gb|BQ786139.1|BQ786139
genomic: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatat ... tcttgtgcagCAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAA
EST: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCA C-G--AGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAAEST: gi|192326234|gb|FK015826.1|FK015826
genomic: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatat ... tcttgtgcagCAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAA
EST: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAG-CA --GCGAGCTTCGGAATEST: gi|192297449|gb|FG989513.1|FG989513
genomic: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatat ... tcttgtgcagCAGCGAGCTTCGGAAT
EST: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAG-CA --GCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAAEST: gi|192333136|gb|FK026465.1|FK026465
genomic: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatat ... tcttgtgcagCAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAA
EST: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTA-GGCA CAGCGAGCTTCGGAATCTC-GGCTAGACAGCCAAAGCCATTGCAATCAAEST: gi|151405473|gb|EV275287.1|EV275287
genomic: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatat ... tcttgtgcagCAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAA
EST: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAG-CA --GCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAAEST: gi|58014682|gb|CX701424.1|CX701424
genomic: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatat ... tcttgtgcagCAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAA
EST: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAA-G-- CAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAAEST: gi|120532679|gb|EH260812.1|EH260812
genomic: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatat ... tcttgtgcagCAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAA
EST: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAG-CA --GCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAA
genomic: CTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatat ... tcttgtgcagCAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCAgtaataatatcttctcactcctgtgcatgacatataaatatatttattgatttccaacgttttgtgttccttacatgtataaatgatctatttggatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcactc