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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttcccaaggtgatgaaaaaagctagaattctggttatggtgtttatgagggggtgaacaacttgttttgattacag

Basic information

species Glycine max
transcript GLYMA07G03680.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03680.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g06000.t01 (Vitis vinifera), 5'ss of exon 4
GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttccca--aggtgat--gaaaaaagctagaattctggttatggtgttta-tgagggggtgaacaacttgtttt--gattacag
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GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctctgtcacttactctctttaattattattttcc-atttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126582|gb|BG791020.1|BG791020
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG