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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttcccaaggtgatgaaaaaagctagaattctggttatggtgtttatgagggggtgaacaacttgttttgattacag

Basic information

species Glycine max
transcript GLYMA07G03680.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03680.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g06000.t01 (Vitis vinifera), 5'ss of exon 4
GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttccca--aggtgat--gaaaaaagctagaattctggttatggtgttta-tgagggggtgaacaacttgtttt--gattacag
|||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||| ||| ||  || |    || ||   ||   ||| | | |||     | |  | ||||| | |  |  | ||  | |      || | |  |  | ||  || ||  |  |    | |   | |||||||  |  | |||
GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctctgtcacttactctctttaattattattttcc-atttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31476276|gb|CD418304.1|CD418304
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|14126582|gb|BG791020.1|BG791020
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|193557652|gb|FK511965.1|FK511965
EST:     GGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: GGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|15812956|gb|BI785231.1|BI785231
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|37997246|gb|CF808835.1|CF808835
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|31308540|gb|CD393743.1|CD393743
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|120496630|gb|EH224797.1|EH224797
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|193336442|gb|FK301590.1|FK301590
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|120496663|gb|EH224830.1|EH224830
EST:     TTACTATGATAAAAGGATAGTCGGATGCCCATGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGATATTGGCTGGAGAAAGACAAGCCCCATG
genomic: TTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|192330937|gb|FK023110.1|FK023110
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCCGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|31306843|gb|CD392046.1|CD392046
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
EST: gi|58024911|gb|CX711652.1|CX711652
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtatca ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATG