1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCTAGAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatatataatcaaccaagtgctaactagtaactaggaaatggtttggtttggttactcacatgttagtagggaaatggatctcaagctaagtttgttttgtttttggtttggttattcag
species | Glycine max |
transcript | GLYMA07G02630.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCATA-TTCAAGTGNNCTTTTGCTCCTAGCTGCCCTGTCNNNNNGAAG GTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGGEST: gi|151404463|gb|EV274277.1|EV274277
genomic: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatat ... ggttattcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGG
EST: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAA GTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAAGGEST: gi|10234233|gb|BE803121.1|BE803121
genomic: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatat ... ggttattcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGG
EST: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAG GTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGGEST: gi|7029221|gb|AW459004.1|AW459004
genomic: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatat ... ggttattcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGG
EST: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAG GTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGGEST: gi|8285039|gb|BE022598.1|BE022598
genomic: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatat ... ggttattcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGG
EST: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAG GTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGGEST: gi|7233215|gb|AW568563.1|AW568563
genomic: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatat ... ggttattcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGG
EST: CTCCTAGCTGCCCTGTCAAAAAGAAG GTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGGEST: gi|192296121|gb|FG989481.1|FG989481
genomic: CTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatat ... ggttattcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGG
EST: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAG -TGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGA
genomic: GAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatat ... ggttattcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCTAGAGCATATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGgtaaatatatataatcaaccaagtgctaactagtaactaggaaatggtttggtttggttactcacatgttagtagggaaatggatctcaagctaagtttgttttgtttttggtttggttattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG