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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATCTTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaaccaaattggatatttgaaatcaaaatatttaacttctttcatcttatgtttttgtcagtttgcttattttattcttctgcgaattttctcttattcaagttattgacttttgagactttccttttcag

Basic information

species Glycine max
transcript GLYMA07G02280.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g23180.1 (Oryza sativa), 5'ss of exon 5
GGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATCTTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaaccaaattggatatttga--aatcaaaatatttaacttctttcatcttatgtttttgtcagtttgcttattttattcttctgcgaattttctcttattcaagttattgacttttgagactttccttttcag
 ||||||||||| ||||||||||||||||| ||||| || |||||| | ||||| ||||| ||| ||||  ||||||| || ||||| |||| | | || ||||  |  |||||     ||||||   | ||||| |||| ||  | | ||    ||    || | ||      | | |||     || |   | || | |  |   |   ||| | ||   ||              
AGAAAGATTTGTATGGTCCTTGATATCTGCAGTTGGAATATTTTGTTTGGGTTCAGGTGCTACCATTGTGCATGGAGTTCAAAACTTATGGAATTCGCAAgtatg-atgcaaatgtatcatttgattcaccaaaagattttaca-catgcactccat---cttattagaaaatctttgttacctaactacagttgttatatcgt--gacacatttatttgacag--------------

upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G51610.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATCTTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaaccaaattggatatttgaaatcaaaatatttaacttctttcatcttatgtttttgtcagtttgcttattttattcttctgcgaattttctcttattcaagttattgacttttgagactttccttttcag
 ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| ||| | ||||||||||||||||||||||||| | |   |||| ||       || |  || |    | |     ||| || |  |      | || | ||     || | |||||  || ||  |   |  ||||  |  ||    | ||  | |||   |||| || || ||||
AGAAAGATTTGTATGGTCTTTGATATCTGCTGTTGGCATCTTTTGCCTTGGGTCTGGTGCTACCATAGTTAATGGAGTACAGAACTTGTGGACTTCTTCGgtaatt-------ttcggcatatcttgtgac----tttgacgttatctgctatttgatctt-----ttggattattagatactctttgtacatttccttggtt--gttcatcaatttt---gactatctttctcag

upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0054g00220.t01 (Vitis vinifera), 5'ss of exon 5
GGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATCTTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaaccaaattggatatttgaaatcaaaatatttaacttctttcatcttatgtttttgtcagtttgcttattttattcttctgcgaattttctcttattcaagttattgacttttgagactttccttttcag
||||||||| ||||||||  |||| ||||| ||||| || |||||||||||||||||||| ||  ||||| |||||||||| || ||||||| | |||| |||                | ||  ||      |  |    |||| || |   |  || ||  |||||   ||  | |||                           ||||||| || ||||  | |||||| |||
GGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAATTTGTGGACTTCACATgta----------------acttagaac-----ttctctggttctctccttccagattcttaccagttgctttggtatat------------------------ggtttattgatttgtgagcatgtcctttccag