Sequence
atgc intronic sequence ATGC exonic sequenceGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGgtatcccaccaactcttcttctcattcgttgacccattagttaattttttactcttcacttattccatagggatagaccaataagcagaatggtaaaata...
Basic information
species | Glycine max |
transcript | GLYMA07G01950.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 4
GCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGgtatcccaccaactcttcttctcattcgttgacccatta--gttaattt-tttactcttcacttattccatagggatagaccaataagcagaatggtaaaata
|||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| || ||||||||||||||||||| | || || ||| | || |||| | | || || ||| | || | | || || | |||
ACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCAACTGGAACCGCTGTTGAGTGGGTTCAGATGCCTGGAATGAAGgtattttattcctctagttttgtttttgttaattggatatagttattctgctttttcctcaatggttgtttttgtattttccg--taacag------------
upper sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 4
GCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGgtatcc--caccaactcttcttctcattcgttgacccattagttaattttttactcttcacttattccatagggatagaccaataagcagaatggtaaaata
|||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || | || | || ||| || | | |||| ||| || || | || || || || | | ||||| | ||
GCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGgtatctttcagtacctttattttacatatatt-atctattaattatttaaataattaattatttttatattggcaaaatggaataatttaatactcaatgc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208252214|gb|GE043468.1|GE043468EST: AGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTTGGTAATTGAAG CCTGGTCCGGATTCCATTGGAGTCGTTGCTATTTCTCACAGTTGCACTGG
genomic: AGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCT-GG-AAT-GAAGgtatcccacc ... atgtgtacagCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACAGTTGCACTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGgtatcccaccaactcttcttctcattcgttgacccattagttaattttttactcttcacttattccatagggatagaccaataagcagaatggtaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccaa