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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATACAATCACATCTCTGGAGAAAATGTACAAACCCAAGCTTTTTGTGGAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcctcagttccttttgtaaatttgaatacttgaatggattatgttgattgagaaggtctgatgaacctttttatacag

Basic information

species Glycine max
transcript GLYMA07G01830.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01830.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g03510.t01 (Vitis vinifera), 5'ss of exon 3
AATATACAATCACATCTCTGGAGAAAATGTACAAACCCAAGCTTTTTGTGGAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcctc---agttccttttgtaaatttgaatacttgaatggattatgttgattgagaaggtctgatgaacct----ttttatacag----
|||| |||||||| ||  ||||||||||| |||||||| | || ||||||||||| ||||| |||||||| || ||  | ||||| |||||||| |||||||| |   |||   ||   ||        |||||||  ||   |  |  ||   | |     |  |||  | |||||    |||| |  |     
AATACACAATCACCTCATTGGAGAAAATGCACAAACCCCAACTGTTTGTGGAGCCTGATCTTGGGATACCACTTGACTTGCTTGACCTCAGTGTATACAAgtatttatctctcaagagtctcaacagcttttgaatttttctttatagcatacagctccgttaa-tctcctcaacctcactttttgtgtaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208113039|gb|GD912428.1|GD912428
EST:     GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAA                         TCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
genomic: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcct ... ttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
EST: gi|207713576|gb|GD695251.1|GD695251
EST:     GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAA                         TCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
genomic: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcct ... ttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
EST: gi|7685236|gb|AW755884.1|AW755884
EST:     GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAA                         TCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
genomic: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcct ... ttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
EST: gi|6718731|gb|AW306378.1|AW306378
EST:     GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAA                         TCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
genomic: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcct ... ttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG