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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAATGTTGTTATGCTCATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTATATATGCAATGGATCATTGGATTCACATTTATATGgtgatttctcttgctcccataccaaattatctcatgatagaaatatatttagaattggcctgaacttagtgaagattttcaagttcataatctgtcaagt...

Basic information

species Glycine max
transcript GLYMA07G01350.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01350.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g41870.1 (Oryza sativa), 5'ss of exon 5
CGGAATGTTGTTATGCTCATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTATATATGCAATGGATCATTGGATTCACATTTATATGgtgatttctcttgctcccataccaaattatc--tcatgatagaaatatatttagaattggcctgaacttagtgaagattttcaagttcataatctgtcaagt
|| |||||||| ||||| |||||  | ||| | ||||||| |||  |  | ||||| |||||||| || ||||||||||| |||||||||||| | |||||| |  ||  || ||  | | |  | |||||  | |  | ||  |  |  | | || |  | ||    ||     | |  || |||| | | | |  | |  
CGAAATGTTGTAATGCTGATTGGTCTTTGTGTTGAGGATAGGAGGCGTTTGCTGGTCTATGAGTACATCTGCAATGGATCCTTGGATTCACATCTTTATGgtaagatcattttctttcttgc--atttatcagtaaaaaaaggcaattcgtgataaatcacttgtctgtaaacttggtaatccagttgacagtttacctacg

upper sequence: GLYMA07G01350.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g02420.t01 (Vitis vinifera), 5'ss of exon 4
CGGAATGTTGTTATGCTCATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTATATATGCAATGGATCATTGGATTCACATTTATATGgtgatttctcttgctccc-ataccaaattatctcatgatagaaatatatttagaattggcctgaacttagtga--agattttcaagttcataatctgtcaagt
|| |||||||||||||| ||||||| ||||||||| || |  |||||| | ||||||||||| |||||||||||||| ||| ||||||| ||| |||||||| |||||| || |||||  | |  |||  |   |  |   ||||  |   | |||  | |   | ||| | |   ||||||  | ||  | |  |    |  
CGAAATGTTGTTATGCTGATTGGGTACTGTATAGAAGACAGAAGAAGGTTGCTGGTTTATGAATATATATGCAATGGCTCACTGGATTCTCATCTATATGgtaatttctgttcctccctgtgcggaatgctactactaatcaaatgcac--aaaatatgtcatca-ttaataatcggattttttatttatttaaataatgacc