Sequence
atgc intronic sequence ATGC exonic sequenceGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGgtatgcatatatttctgtcacaatttttctttcccagataagcttaatttattttttaatagtatttatttttccttgaag
Basic information
species | Glycine max |
transcript | GLYMA07G01000.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01000.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G883149_T01 (Zea mays), 5'ss of exon 3
----------------------GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGgtatgcatatatttctgtcacaatttttctttcccagataagcttaatttattttttaatagt----atttatttttccttgaag----------------
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TTTCCAACCTTGGTGGTTTCAGGAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaa-gccttttcttactacgtacatgatattaagggcttcttttcttgttctctttattgtgtacatttattatcctttgatctgaaatcacctgactc
upper sequence: GLYMA07G01000.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G883149_T03 (Zea mays), 5'ss of exon 4
GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGgtatgcatatatttctgtcacaatttttctttcccagataagcttaatttattttttaatagt----atttatttttccttgaag----------------
|| || ||||||||||| ||||| ||||| ||||| || || || ||||||||||| || ||||||||||||||||| | || | || | | | | || || | | || || || ||||||| | | ||||
GAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaa-gccttttcttactacgtacatgatattaagggcttcttttcttgttctctttattgtgtacatttattatcctttgatctgaaatcacctgactc
upper sequence: GLYMA07G01000.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g01710.t01 (Vitis vinifera), 5'ss of exon 4
GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGgtatgcatatatttctgtcacaatttttctttcccagataagcttaatttattttttaatagtatttatttttccttgaag--------------------
|| ||| ||||||| || |||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||| |||| | ||| | | || | | | | || | || | | | || || | |
GAACAACATTGACAAGAGGGAGGCACTTGAGAACTTGGATCTCATTCTCCTATGCCTTGATGAGATTGTTGATGGAGGgtatgca-atatgcttctcatgttctctcgtcctttaaaatatttcaaaatgcccttgtttacacatgaacttaatttaggatcttctcatagcaagtgcgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6724704|gb|AW309037.1|AW309037EST: GAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGG GATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCA
genomic: GAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGgtatgcatat ... ttccttgaagGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGgtatgcatatatttctgtcacaatttttctttcccagataagcttaatttattttttaatagtatttatttttccttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG