Sequence
atgc intronic sequence ATGC exonic sequenceGGAGTATATCTAAGATGGCCATGTTGCTTGCCCTTGTTATTCTTTGCATATATTTGTTTCGCAGTACAACTCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacatcataaattatacatgctgtgaatcttctcttgtaccttttacttgttctgatctgtcatttacatcctgttttag
Basic information
species | Glycine max |
transcript | GLYMA07G00350.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G78920.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAGTATATCTAAGATGGCCATGTTGCTTGCCCTTGTTATTCTTTGCATATATTTGTTTCGCAGTACAACTCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacatcata-aattata--catgctgtgaatcttctcttgtacctt-ttacttgttctgatctgtcat-ttac-atcctgttttag
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GCACTATATCCAAGATGGCCATTTTGCTAGCTTTTGTGATTCTTTGCATATATCTATTCCGTAGCTTAACTCCCCAGCAAGAGGCTGCTGGTTTAGGAAGgtgctgatacatgattacattcacaagatttattttatcttttgaattgttgtgaatgaagcttagccatattactattttgctgcag
upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 4
GGAGTATATCTAAGATGGCCATGTTGCTTGCCCTTGTTATTCTTTGCATATATTTGTTTCGCAGTACAACTCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacatcataaattatacatgctgtgaatcttctcttgtacct---tttacttgttctgatctgtcatttac--atcctgttttag---
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GGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCATATATTTGTTTCGCAGTACAACTCCTCAACAAGAATCTTCTGGCATAGGAAGgtgata--acagatt-tacatattagattgcatctcttccacatcaatattcttgtgatgaacgatcctgttctggtcctgttgatacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213597643|gb|DB962153.1|DB962153EST: TATTTGTTTCGCAGTACAACTCCTCAACAGGAATCTTCTGGCCTGGGAAG GGACA-CTTCTGCATACATCACCGTAGCT
genomic: TATTTGTTTCGCAGTACAACTCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacatcat ... cctgttttagG-ACAACTTCTGCATACATCACCGTAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGTATATCTAAGATGGCCATGTTGCTTGCCCTTGTTATTCTTTGCATATATTTGTTTCGCAGTACAACTCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacatcataaattatacatgctgtgaatcttctcttgtaccttttacttgttctgatctgtcatttacatcctgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC