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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAGgtacagaaattgaaatatctgataattatatttatgcttgatggttttgtaatgtaaactccattatctgaaattttattattattttatttgtgtgaatag

Basic information

species Glycine max
transcript GLYMA06G43820.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 4
TTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAGgtacagaaattgaaatatctgataattatatttatgcttgatggttttgtaatgtaaactccattatctgaaattttattattattttatttgtgtgaatag
||   || ||||| ||  ||||||| |||||| ||||||||||| ||||||| || ||||||||||||||| ||          | |||  || ||  ||||      | ||  || | | | |   |   | ||| ||| | |  ||| |||||    || ||       
TTTCGGAAGAGACCTGCAATGAAGTAGAGAGCTTGGTGTTTGATCTATTTGCAAATCTTGGTGCTACAGgtgca----------tttctagtacttcaattt------ggtgccttggaagttttttcataaatatgtgacact--att-ttattcgggttttgcag----

upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G128688_T02 (Zea mays), 5'ss of exon 4
TTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAGgtacagaaattgaaatatctgataattatatttatgcttgatggttttgtaatgtaaactccattatctgaaattttattattattttatttgtgtgaatag
||  ||| || || || |||||||| |||||| |||| |||||| | ||||| || |||||||||||||||       |||   |       ||||   |||   ||| |   || | |  |      | | || | ||||  ||| || || |||   || ||       
TTTCTGAAGAAACCTGCGATGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtc------ttgtcctgctcttcaatttggttt---cttcaaacttctttctt------ttctttgtatgaa--tttgtt-ttgtttggattttgcag----

upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 4
TTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAGgtacagaaa----ttgaaatatctgataattatatttatgcttgatggttttgtaatgtaaactccattatctgaaattttatt---attattttatttgtgtgaatag-------------------
||| ||||||||  ||||||||||||||||| || || |||||| | ||||| || ||||||||||||||| ||  ||     ||||||     | | ||  ||  || || | || || ||   ||| |  | || |   | |  | ||| |   || ||   |||||  | |||                     
TTACTGAGGAGAGGTGTGATGAAGTTGAGAGTCTAGTCTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtgcaagaaatatctgaaatgggaaaaagttccatgaat-ctagctgcttctgc--tgtgactttcactggtttatttgttagttagatgatcaaatttg-ataaattttcttgcattcttgtttcag