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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGgtatagtgcagacttattacagaagtatttctgtctgatccttcgctggatgctttaagttagaattttggaaattttctgaatataatgttcctttagc...

Basic information

species Glycine max
transcript GLYMA06G42210.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G42210.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 5'ss of exon 5
TATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGgtatagtgcagacttattacaga---agtatttctgtctgatccttcgctggatgctttaagttagaattttggaaattttctgaatataa-tgttcctttagc
  |    || || ||  |  | || || |||||| |  | || |||||||| |||||||| |||||||| || || ||||| |||||||||||||  |||||| |   ||   ||  ||||||    | |  | | | | ||   |             || |     | || | || ||  |   || |  | ||    ||  
AGTGAATGGAACATCTATTCTCTTTTTGCCTTGTGCAGTTTATAATTGGACACCACCTGAAGGTGCTGGACAGTTCCATGGTATGCCATTGGATGTAAAGgtacac--catttttcctacagatgagggagattttttttatgtattaacactaaaagaaaatggttttcttagcaaattcttttgtacagctattaaaata--

upper sequence: GLYMA06G42210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G143688_T01 (Zea mays), 5'ss of exon 5
TATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGgtatagtgcagacttattacagaagtattt--ctgtctgatccttcgctggatgctttaa--gttagaattttggaaattttctgaatataatgttcctttagc
  ||   || || || ||  | ||||| |||||| || | || |||||||| || |||||||||||||| || |||||||| || || ||||||| |||||||||       |||| |    | | | ||   ||     || || |||   |   || |  |  | || ||  |   |  | | |||| ||  |    |    
AGTTAATGGAACATCTGTTCTCTTCTTGCCTTGTGCTGTTTATAATTGGACCCCGCCTGAGGGTGCTGGACAGTTTCATGGTATACCCTTGGATGTTAAGgtataacattttcttacttgtaaggaacttaattggtcagtcttttgctctttttcttcatggaaataaattgtggcctaatattaatagaaaatagtat----

upper sequence: GLYMA06G42210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G350001_T01 (Zea mays), 5'ss of exon 11
TATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGgtatagtgcagacttattacagaagtattt--ctgtctgatccttcgctggatgctttaa--gttagaattttggaaattttctgaatataatgttcctttagc
  ||   || || || ||  | ||||| ||||||  | | || |||||||| || |||||||||||||| || |||||||| || || ||||||| |||||||||       |||| |    | | | ||   ||     |  || |||   |   || |  |  | || ||  |  ||  | | |||| ||  |    |    
AGTTAATGGAACATCTGTTCTCTTCTTGCCTTGTGTTGTTTATAATTGGACCCCGCCTGAGGGTGCTGGACAGTTTCATGGTATACCCTTGGATGTTAAGgtataacattttcttacttgtaaggaacttaattggtcagtgttttgctctttttcttcatggaaataaattgtggcataatattaatagaaaatagtat----

upper sequence: GLYMA06G42210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G038667_T02 (Zea mays), 5'ss of exon 8
TATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGgtatagtgcaga-cttattacagaagtattt--ctgtctgatccttcgctggatgctttaa--gttagaattttggaaattttctgaatataatgttcctttagc
  ||   || || || ||  | ||||| |||||| || | || |||||||| || |||||||||||||| || ||||||||  | || ||||||| |||||||||        |||| |    ||| | ||   ||     |  || |||   | | || |  |  | || ||  |   |  | | |||| ||  |         
AGTTAATGGAACATCTGTTCTCTTCTTGCCTTGTGCTGTTTATAATTGGACCCCGCCTGAGGGTGCTGGACAGTTTCATGGTGTACCCTTGGATGTTAAGgtataacatttttcttacttgtaaagaacttaattggtcagtgttttgctcttttccttcatggaaataaattatggcctagtgttaatagaaaatagta-----

upper sequence: GLYMA06G42210.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G45320.1 (Arabidopsis thaliana), 5'ss of exon 5
TATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGgtatagtgcagacttattacagaagtatttctgtctgatccttcgctggatgctttaagttagaattttggaaattttctgaatataatgttcctttagc
 || |  ||  | |||||  | ||  |||| ||| || | ||||| ||||| || ||||| ||||||||||| ||||||||||||||||| ||||  ||||||   |  |  | ||      ||  ||         |  | ||    ||  ||      | |  |||| | |                           
AATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGgtactctaaatcccta-----aaaccataaaccctcaaagcatcatcagagtctcattactcgtttttttgcag--------------------------

upper sequence: GLYMA06G42210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g00310.t01 (Vitis vinifera), 5'ss of exon 6
TATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGgtatagtgcagacttattacagaagtatttctgtctgatcct--tcgctggatgc-tttaagttagaattttggaaattttctgaatataatgttcctttagc----------------------------------------------------------------
|||||| ||||| |||||  | ||  |||||||| || | ||||||||||| ||||| ||||||||||| |||||||||||||||||  | ||||  |||||| |    |   |  | | |  | | ||||    ||||| |  ||  | | ||   || |     |  |||||  ||    ||  | | ||     |||| |                                                                
TATTGGTGGTACTTCAGTGCTCTTTCTACCTTGTGCTATTTACAATTGGACACCACCAGAGGGTGCTGGACAATTTCATGGCATGCCCCTTGATGTGAAGgtaca---taatttcttcaaatcattttttcacattgatcttggtcaatagctgagcttgaacatcatctttgggtatcccttgggtttgatccctttttaacatatatggcaagtttttatgagcatcattttttatttacgtctggctttgtttcctgtgcacag