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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGAAACATATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatctatcaatctttttgcatgacatgcatagactgttcttctgtagaaacttttgcccctgattgtgtttatgcaaatatgcatctataagca...

Basic information

species Glycine max
transcript GLYMA06G41510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 3
AGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGAAACATATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatctatcaatctttttgcatgacatgcatagactgttcttctgtaga--aacttttgcccctgattgtgtttatgcaaatatgcatctataagca-------------------------------------------------------------------------------------
 | || || ||||| ||| ||||||| |||||||| || ||  |||| |||||| ||||||| ||||||||||| || ||||| || || || || || ||||||| | ||| |  |  || | |||  |||   ||  ||| |  ||  || |  |||| ||    |    |     ||| |   |||   | ||  | ||                                                                                     
CGTAACCTAGTGAACTTGATTGGATACTGTGCAGAGAAAGGCCAACACATGCTTATATATGTTTACATGAGTAAAGGAAGCTTAGCTTCTCATTTATACAgtaagt-aactacc--tggttatacataccatat-taatctgcttgtcactaaatgaactgttaatgcaatgttgagctattcgg-tatctttgta-gaacatttattgagttgatggtttagacttcactaaatgatgagccttggtaaagatttgagatgcactaaaatggtacttttgatacag

upper sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 3
AGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGAAACATATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatctatcaa-tctttttgcatgacatgc-ata-gactgttcttctgtagaaacttttgcccctgattgtgtttatgcaaatatgcatctataagca
||||| || |||||||||||||| |||||||| ||||||||  | ||||||||| ||||||| ||||||||||| || || ||||| || || |||||| |||||    | ||||| ||| | |   | |    | ||   | ||      |||| |    ||  | ||||| |    |||     ||  || | | |  |  
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatcaactctctctattttattctctatgcaagtgacaagttgtaaattggttgacacctgactcc--ttaacaggattagcgtgtgtctga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014430|gb|CX701172.1|CX701172
EST:     GCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATA                         GTGATGTGAATGAAGCACTGTCCTGGGATTTGAGGGTTCCCATAGCTTTAG
genomic: GCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatc ... ctatattcagGTGATGTGAATGAAGCACTGTCCTGGGATTTGAGGGTTCCCATAGCTTTAG