1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAGCACATTCCCTTGTTCAGACTTCTCTTCCCTCCATTCCAAAAGTACATAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagcacaatggagatgattaaatattttgggtccatatgaaaaagattatttatagtttatttggacttatcttatgacataatcacatgtgta...
species | Glycine max |
transcript | GLYMA06G38160.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAACCAAGGTTTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|7693171|gb|AW761268.1|AW761268
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCANGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|7692645|gb|AW760746.1|AW760746
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCANGANAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|192317174|gb|FK009775.1|FK009775
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|209720569|gb|BW677304.1|BW677304
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|6718926|gb|AW306573.1|AW306573
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|213589593|gb|DB982654.1|DB982654
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: CAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|192309153|gb|FG999086.1|FG999086
genomic: CAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAG-AAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTA-CAAAATCAEST: gi|209722304|gb|BW665814.1|BW665814
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCA
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|6718485|gb|AW306132.1|AW306132
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|192307156|gb|FK002304.1|FK002304
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|209708857|gb|BW673893.1|BW673893
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|151399417|gb|EV269288.1|EV269288
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|12690020|gb|BG156356.1|BG156356
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAAGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAT GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|209726907|gb|BW675334.1|BW675334
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|192297785|gb|FG992803.1|FG992803
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCGAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|151401803|gb|EV271616.1|EV271616
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|298165448|gb|HO011497.1|HO011497
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|117557761|gb|EG702146.1|EG702146
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|8404324|gb|BE059958.1|BE059958
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|26059447|gb|CA802361.1|CA802361
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|192309154|gb|FG999087.1|FG999087
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|10256505|gb|BE824271.1|BE824271
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TNNNCNAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|214006830|gb|DB987684.1|DB987684
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: CAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGGGCTGGAACEST: gi|5057756|gb|AI736232.1|AI736232
genomic: CAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|10255794|gb|BE823560.1|BE823560
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|9983406|gb|BE657514.1|BE657514
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|192297103|gb|FG988199.1|FG988199
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|14195748|gb|BE657567.2|BE657567
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|31471792|gb|CD413820.1|CD413820
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|7692208|gb|AW760321.1|AW760321
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: GATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|213597261|gb|DB981597.1|DB981597
genomic: GATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: AACCAAGGGCTTTGT-TGCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACEST: gi|6483132|gb|AW202324.1|AW202324
genomic: AACCAAGGGCTTTGTCT-CAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
EST: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAG GTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagc ... tcttgtgtagGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCACATTCCCTTGTTCAGACTTCTCTTCCCTCCATTCCAAAAGTACATAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGgtaatatagcacaatggagatgattaaatattttgggtccatatgaaaaagattatttatagtttatttggacttatcttatgacataatcacatgtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaga