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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaaattctcttcatcacatgccctttacatatgaaatatccaaattattttcacatgttccaattaccttccacttgtatgcattgttttctttttcct...

Basic information

species Glycine max
transcript GLYMA06G37080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 2
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaa--attctcttcatcacatgccctttacatatgaaatatccaaattattttcacatgttccaattaccttccacttgtatgcattgttttctttttcct
|| | |||||||| || ||| || |  | || ||||||||||||||||| ||||||||||||||| | |||||||||||||   |||| ||| | ||  ||| |  |||   |   ||        |||   | | || |    || || | | |     ||   | ||   ||  |||   ||   | ||| ||||| |  
ATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGgtgatgattgattctctctttgatgtttttagtttcaattggaaaagttttgtcctttaattaagagtattgtctcctt---tg---tctttacttttgcag

upper sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaaattctcttcatcacatgccctttacatatgaaatatccaaattattttcacatgttccaattaccttccacttgtatgcattgttttctttttcct----
|| | |||||||| || ||| || |  | || || || ||||||||||| || |||||||||||| | ||||||||||| | | |||| ||| ||||  |||  |     |   | | |   | | | | || |           |  | |        |   | ||| |   |||  |  | | | | |  ||| |  |    
ATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTTTCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGgtttacatattgtcttatacttcatgttcttaggttgagcattgttagtctctgtcatcttttactacatggaactaatggggaatttgtcttttatggtgcag

upper sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g02660.t01 (Vitis vinifera), 5'ss of exon 3
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaaattctcttcatcacatgccctttacatatgaaatatccaaattat---tttcacatgttccaattaccttccacttgtatgcattgttttctttttcct
|| ||||||||||||| |||||  | || |||||||| || ||||||||||||||| | |||||  | || |||||||| | |||||| ||||  ||| ||||  ||||| |     ||   | ||     ||    |||||    |||   |  ||  | |||| ||| | | |  ||    |  | | |||| | ||    
ATCGAGTTCTTCCTCCTCAGTTGTTGTTGAAGTGGCCAAAGGAAGCTTCATTTTGCCTATGGTTGCTGCACCCTGAGCCAAGTAGTCGGCCAAAGATAAGgtagtttctccttgcagcagatctttcttgcattgt-tatcctggatatggatcccatcttttcctatttcttgcttctcagttttagtcttttttcttaa--