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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACAGCAGGGGTCTTATCCAATCAAGTTATTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGgtagtggagtttaatgatggtaaattgtcacttggagtaaaattttgttattgttttaacaatattttaatggatttgtacag

Basic information

species Glycine max
transcript GLYMA06G32680.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S323_56V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGACAGCAGGGGTCTTATCCAATCAAGTTATTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGgtagtggagtttaatga-tggtaaattgtc-acttggagtaaaattttgttattgttttaacaatattttaatggatttgtacag-----------------------------------------------------
||| || || || |||||||| |||||  |||| || ||||||||||||||||| |||||||||  |||||| || |||||  | ||||||||||| |||||| |    ||   | | | ||      || |    |  |  |||||  |||    |   | | |||  |  |  ||   | ||                                                      
TGGTCAACAAGGATCTTATCCTATCAAACTATTCTACACCTCCAACATGCCCATCATTCTTCAGAGTGCCCTCGTATCCAACTTGTACTTCATTTCACAGgtattttttttctgttacttgtcttcaatctatacagcttgcaatttctttagcaatgcga-agtatcgttgtcaatggtttcaactcattaacttcttggaattaattaaaattcaaaagacttgtcgtcttttcag

upper sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S114_48V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGACAGCAGGGGTCTTATCCAATCAAGTTATTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGgtagtggagtttaatgatggtaaattgtcac-ttggagtaaa---attttgttat---tgttttaacaat-attttaatggatttgtacag-
 || || || || ||||| || || ||||| || || ||||||||||||||||| ||||| |||   |||||||| |||||  | ||||||||||| |||||   |    |   |  | ||  | |||| | || | || ||   ||| ||  |    ||| |   || |   |||  |   | ||| |   
CGGTCAACAAGGATCTTACCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTCCAGAGCGCCCTTGTCTCCAACTTGTACTTCATTTCACAGgtt-cgcctctctgttcttgttgactgtcgcattcgtgtcaagtaattctgaaagacgtgtctactcacttgcttttgtttgtgtgttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21889820|gb|BQ743033.1|BQ743033
EST:     CATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATNTTCTCAG                         CTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAA
genomic: CATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCAT-TTCTCAGgtagtggagt ... atttgtacagCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAA
EST: gi|37997748|gb|CF809337.1|CF809337
EST:     CCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAG                         CTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
genomic: CCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGgtagtggagt ... atttgtacagCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
EST: gi|16345250|gb|BI970845.1|BI970845
EST:     AGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAG                         CTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
genomic: AGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGgtagtggagt ... atttgtacagCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
EST: gi|254327677|gb|GR834642.1|GR834642
EST:     CCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAG                         CTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
genomic: CCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGgtagtggagt ... atttgtacagCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
EST: gi|192309135|gb|FG999404.1|FG999404
EST:     ATCTCTACTTCATTTCTCAG                         CTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
genomic: ATCTCTACTTCATTTCTCAGgtagtggagt ... atttgtacagCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
EST: gi|37995033|gb|CF806622.1|CF806622
EST:     CCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAG                         CTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA
genomic: CCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGgtagtggagt ... atttgtacagCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAA