Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTAGACACGTGGGTTTCTGCATCAGGGAAGAATGGTATGCGTCGTGATTGGCTTGTGCGTGACGCCAAAACTGGTGAAATCTTGACAAGAGCCTCCAGgtagatatcagtttcaggaatcctttttttctgttgcctatagacatgttttgaagagtttttctgaatctgaatgtttctctctggtgatttggcactg...

Basic information

species Glycine max
transcript GLYMA06G23560.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G23560.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G08510.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGTAGACACGTGGGTTTCTGCATCAGGGAAGAATGGTATGCGTCGTGATTGGCTTGTGCGTGACGCCAAAACTGGTGAAATCTTGACAAGAGCCTCCAGgtagatatcagtttcaggaatcctttttttctgttgcctatagacatgttttgaagagtttttctgaatctgaatgtttctctctggtgatttggcactg--
|||||||||| |||||   |   || || |||||||||||||||||||||||||| || || |||   || ||||| |||| ||| ||| |||| || ||||  | ||    ||  || ||  || |    | || |  ||   | |  | |||  | |  ||     |    |||    |  ||| ||  ||  | ||   
AAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAGgtt-agattttcttttggtatatttataagttatt-ctcattttcttcatctgatcattcattggtctttctgatgaagatacctgatgtctttactctctt

upper sequence: GLYMA06G23560.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g04480.t01 (Vitis vinifera), 5'ss of exon 4
AAGTAGACACGTGGGTTTCTGCATCAGGGAAGAATGGTATGCGTCGTGATTGGCTTGTGCGTGACGCCAAAACTGGTGAAATCTTGACAAGAGCCTCCAGgtagatatcagtttcaggaatcctttttttctgttgcctatagacatgttttgaagagtttttctgaatctgaatgtttctctctggtgatttggcactg-----------
|||| || || ||||| | |||||| ||||||||||| ||||||||||||||| |  | |||||   ||||||||| ||||   | || ||||||||||||| |  |   ||||     |  ||  |  | |      |  ||   ||||   ||  |||||| |   ||| |||| || |  |      ||||| || |           
AAGTGGATACTTGGGTATGTGCATCTGGGAAGAATGGCATGCGTCGTGATTGGATAATCCGTGATTGCAAAACTGGGGAAACTCTAACCAGAGCCTCCAGgttggaagttgttttgtagaaactcatgattt------tccagtgttgttc--aattgttttttt---tctcaatgcttatgacaaacattttggaaccgttctgcctttt

upper sequence: GLYMA06G23560.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S167_109V6.1 (Physcomitrella patens), 5'ss of exon 3
AAGTAGACACGTGGGTTTCTGCATCAGGGAAGAATGGTATGCGTCGTGATTGGCTTGTGCGTGACGCCAAAACTGGTGAAATCTTGACAAGAGCCTCCAGgtagatatc----agtttcaggaatcctttttttctgttgcctatagacatgttttgaagagtttttctgaatctgaatgtttctctctggtgatttggcactg----------------------------------------
| || | |||||||||| ||||||| || |||||||| |||||||| ||||||||||| || ||   |||||| ||  | || ||  |  | ||  | ||||  |||||    |    | |||  |||  |  |     |   | | | |  || | || |  | | |          | ||| | |||| | || | | | ||                                        
AGGTGGGCACGTGGGTTGCTGCATCCGGAAAGAATGGGATGCGTCGAGATTGGCTTGTACGAGATTACAAAACAGGACAGATTTTAGCCCGTGCTACTAGgtgaatatccccaatgacctggagccctcctcgttaaaaggacacacaaagcttctcaaaaaatctaccatggtc---tatttttttctg-ttatctagaagtgcatgatggtgatattgtttaggattggttgtggtgtgcag

upper sequence: GLYMA06G23560.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S121_22V6.1 (Physcomitrella patens), 5'ss of exon 3
AAGTAGACACGTGGGTTTCTGCATCAGGGAAGAATGGTATGCGTCGTGATTGGCTTGTGCGTGACGCCAAAACTGGTGAAATCTTGACAAGAGCCTCCAGgtagatatcagtttcaggaatcctttttttctgttgcctatagacatgttttgaagagtttttc-----tgaat---ctgaatgtttctctctggtgat-ttggcactg-----------------
|  | ||||| |||||  | || || ||||||||||| |||||||| |||||||||||||| |||  |||| | ||  | || ||  |  ||||  ||||||   ||||      |    ||||  ||   |  |  ||  ||  || |  ||||| |  | |      |||||   ||||| |  | ||  ||||||| || ||| |                  
AGATGGACACATGGGTGGCAGCTTCTGGGAAGAATGGAATGCGTCGGGATTGGCTTGTGCGAGACTACAAATCAGGACAGATTTTAGCGCGAGCTACCAGgtcagtatcccaccaaattgtcctccttgaatagtatcttaagtaatctactgaagcgagtgtggtcagtgaattggctgaaggcgtatca-tggtgatatttgcagttcgtgttgtgttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394670|gb|EV264541.1|EV264541
EST:     TGGCTTGTGCGTGATGCCAAAACTGGTGAAATCTTGACAAGAGCCTCCAG                         TGTTTGGGTCATGATGAATAAAGTGACAAGAAGACTGTCTAAAATTCCCGA
genomic: TGGCTTGTGCGTGACGCCAAAACTGGTGAAATCTTGACAAGAGCCTCCAGgtagatatca ... tgttatgcagTGTTTGGGTCATGATGAATAAAGTGACAAGAAGACTGTCTAAAATTCCCGA