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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCGCTTTTTCTTGGATAACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATGgtgagaatattcatggatttcttataggcttactgttaatagattctgttgtttcattacaatttgtatgatgtgtaatatggcttccctttttatttcaag

Basic information

species Glycine max
transcript GLYMA06G20360.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 4
CCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCGCTTTTTCTTGGATAACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATGgtgagaatattcatggatttcttataggcttactgttaatagattctgttgtttcattacaatttgtatgatgtgtaatatggcttccctttttatttcaag
||| |  ||||| ||||||||||||||||||||   |||||||||| | ||||||||    ||| | ||| | || ||| | || ||  |  ||||| |||| | | |          |  |  || |  || |||| | |   ||| |||   ||| |    ||  || ||       || | ||    |  ||       
CCTGACGGTTCTGTTTGGAATGATGTTCCAGTTCGACTTTTTCTTGAAGAACAGTTTCCCTGTTGTCTTCCTACTTTTCATGCTTTTCCAGTTTAATTTGgtaaaact---------ctcttgctaagactaatgtttacac-ctcttttggcacatcag---ttaaattattaacttcattgtttgtggtgctag------

upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 4
CCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCGCTTTTTCTTGGATAACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATGgtgaga----------atattcatggatttcttataggctta--ctgttaatagat-tctgttgtttcattacaatttgtatgatgtgtaat-atggcttccctttttatttcaag
  |||| |||||||||||||||||||||||||||   ||||||||  | |||||||||   ||| | ||| |  |||||||||| ||  |||| |||||||| |            ||  || |  |||  | || |  ||    ||||  ||||  |   |  |   ||| ||   | |||    |  | | || |  |    || |  ||| ||
TTTCATTGTTCTCTTTGGAATGATGTTCCAGTTTGATTTTTTCTTAAACAACAGTTTTTCAGTTGTATTCCTCTTGTTCTTCCTTTTCCAACTCAATATGgtaatttttctttcttattatcctaaattggtcattgattttatttgttcttagacataaataatcctatttcagcatatatatcattcattcatcgtgttggcttgtgattctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193637439|gb|FK584462.1|FK584462
EST:     ACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATG                         ACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCA
genomic: ACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATGgtgagaatat ... ttatttcaagACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCA
EST: gi|207704244|gb|GD685030.1|GD685030
EST:     ACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATG                         ACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCA
genomic: ACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATGgtgagaatat ... ttatttcaagACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCA