Sequence
atgc intronic sequence ATGC exonic sequenceAAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTCAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggcttatgctggattttttactcaaatctttgtgtgattgaaatagtaagttgaaaagctggtggtgatttaggtttctttgaatgaatgatacag
Basic information
species | Glycine max |
transcript | GLYMA06G20170.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G20170.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G74740.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTCAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggcttatgctggattttttactcaaatctttgtgtgattgaaatagtaagttgaaaagctggtggtgatttaggtttctttgaatgaatgatacag
|||||||||||||||||||||||||| ||||| |||||||| ||||||||| | ||||| || || ||||||||||||| ||||||||||||||||| || || | | | || | ||| || | | ||||| || | | || | || || | || | | ||| |
GAATGCAAAGAAAGCTCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGGTTGAAGCAATTCTCCATGATGAATAGATTGAAAAAGAAAGCTCTGCGTgtaagtgttgcctctcatttttttcagatgagtt---tatacttttgtttggagctttgattggtttaacttact--tgctcccttttgatgcttccag------------
upper sequence: GLYMA06G20170.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G18890.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTCAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggcttatgctggattttttactcaaatctttgtgtgattgaaatagtaagttgaaaagctggtggtgatttaggtttctttgaatgaatgatacag
||||||||||||||||| |||||||| ||||||||||| ||||| || ||| | |||||||| ||| ||||||| |||||||||||||||| ||| || || || | | || | | | |||| | || || | | | | || || | | |||| |||| | | | | |||
GAATGCAAAGAAAGCTCCCAATGTTCCTTTAGGAGATATAGTCAGATCTAGGTTGAAGCAGTTCTCTATGATGAACAGATTCAAAAAGAAAGTTCTTCGTgtaagtgtttttttt--ttgccttttacttttctgctgaagtttgtagagagtctgttgtgtgtgtctatat-ttggttttgatcattatcatccctgttaatgcttccag
upper sequence: GLYMA06G20170.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g05520.t01 (Vitis vinifera), 5'ss of exon 4
AAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTCAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggcttatgctggattttttactcaaatctttgt-gtgattgaaatagta---agttgaaaagct--ggtggtgatttaggtttctttgaatgaatgatacag
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||| ||||| |||||||| |||||||| |||| || || || | | | | | | || | | |||||| | || |||| ||| | |||| | | | | |||||| |||| || | |||| | ||
GAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGAACAAGGCTCAAGCAGTTCTCTTGCATGAACAGATTCAAGAAGAAAGCCATGCGAgtaagtgtccacatttgttgaag-tgtaactgctactcaggctgtgaccgttattgccataatttgcagttcatatcttttatagatgatttctgtttgttccatcaaatgctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14258897|gb|BG881805.1|BG881805EST: GGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGG GTAATTGCAGATCATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATG
genomic: GGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatct ... aatgatacagGTAATTGCAGATCATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTCAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggcttatgctggattttttactcaaatctttgtgtgattgaaatagtaagttgaaaagctggtggtgatttaggtttctttgaatgaatgatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA