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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTAGCATATGAGAAGGCAGAAGAGATCTTGCTGAGGCCTGAGGCTGAGATTGACAGGCCTGAATTGCTTTCTTTAGTTCAGATTCACCATGCACAGgtgcgatgatcttaatttgatagattaatgattctaatctctcggttcattaacatattttataatccttttag

Basic information

species Glycine max
transcript GLYMA06G18330.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18330.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g09890.t01 (Vitis vinifera), 5'ss of exon 4
TGTGTTAGCATATGAGAAGGCAGAAGAGATCTTGCTGAGGCCTGAGGCTGAGATTGACAGGCCTGAATTGCTTTCTTTAGTTCAGATTCACCATGCACAGgtgcgatgatcttaatttgatagat----taatgattctaatctctcggttcattaacatatttt----ataatccttttag-----------------------------------------------
 || |  |||||||||||||||| ||||||||||||  |   ||| |  |||||||||||||| || ||||||||  ||||||||||||| |||||||||||||  | ||    ||   ||| |     ||||| ||    |     || |  ||    ||||||    | ||   ||| ||                                               
AGTTTCTGCATATGAGAAGGCAGCAGAGATCTTGCTCCGCTGTGAAGAAGAGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCATCATGCACAGgtgcattaattaatatgctatatacatcataatgttttatgttagcaggctttttcttttattttcaacaaaacaatttgagtgaatcactgtaattgttttcaacctggatacatgccttgtgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343234|gb|GR856938.1|GR856938
EST:     AGATTGACAGGCCTGAATTGCTTTCTTTAGTTCAGATTCACCATGCACAG                         TGCCTGATACTAGAAAGTTCATCTGAAAATAGTTCAGATAAAGAACTTGAA
genomic: AGATTGACAGGCCTGAATTGCTTTCTTTAGTTCAGATTCACCATGCACAGgtgcgatgat ... atccttttagTGCCTGATACTAGAAAGTTCATCTGAAAATAGTTCAGATAAAGAACTTGAA
EST: gi|21255944|gb|BQ452832.1|BQ452832
EST:     AGATTGACAGGCCAGAGTTGCTTTCTTTAGTTCAGATTCACCATGCACAG                         TGCCTGATACTAGAAAGTTCATCTGAAAATAGTTCAGATAAAGAACTTGAA
genomic: AGATTGACAGGCCTGAATTGCTTTCTTTAGTTCAGATTCACCATGCACAGgtgcgatgat ... atccttttagTGCCTGATACTAGAAAGTTCATCTGAAAATAGTTCAGATAAAGAACTTGAA