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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTGTAGGGAAGGTGACAATGTTGCATCTCTATCAAGGGGCATTTGTTGACATTGGCGGGGTACATGATGGgtagctatcaatacttatgttagacctttcagtgttctttgaatattttctgtatagtgttaatttccttattgtttggaatgctgcactacttctcgga...

Basic information

species Glycine max
transcript GLYMA06G18080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18080.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 4
ATTTGTGTAGGGAAGGTGACAATGTTGCATCTCTATCAAGGGGCATTTGTTGACATTGGCGGGGTACATGATGGgtagctatcaatacttatgttagacctttcagtgttctttgaatattttctgtatagtgttaatttccttattgtttggaatgctgcactacttctcgga-----
||||||| ||| || || || |   | || || |||||||||||||||||||||||||| || ||| ||||||||||  | ||| | |  ||   ||    ||       |||  | |||||     | ||| ||  |||  ||||   |  |||        || | |          
ATTTGTGCAGGTAAAGTTACTACTCTTCACCTTTATCAAGGGGCATTTGTTGACATTGGAGGTGTATATGATGGgtaattgtca-ttccgattccagtttgtttgaca--cttccattattt--gaaagagtttttttttttttatcagtaagaaaatatgtgtattgcaaaagaggcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208210079|gb|GE005610.1|GE005610
EST:     GGCGGGGTACATGATGG                         GTGGGTTCCTATAAAGAACAATGATTGGTATTGGCTTCGCCATTACATAAA
genomic: GGCGGGGTACATGATGGgtagctatca ... tgtgttctagGTGGGTTCCTATAAAGAACAATGATTGGTATTGGCTTCGCCATCACATAAA
EST: gi|193423092|gb|FK389319.1|FK389319
EST:     GGCGGGGTACATGATGG                         GTGGGTTCCTATAAAGAACAATGATTGGTATTGGCTTCGCCATCACATAAA
genomic: GGCGGGGTACATGATGGgtagctatca ... tgtgttctagGTGGGTTCCTATAAAGAACAATGATTGGTATTGGCTTCGCCATCACATAAA
EST: gi|208322402|gb|GE122583.1|GE122583
EST:     GGCGGGGTACATGATGG                         GTGGGTTCCTATAAAGAACAATGATTGGTATTGGCTTCGCCATCACATAAA
genomic: GGCGGGGTACATGATGGgtagctatca ... tgtgttctagGTGGGTTCCTATAAAGAACAATGATTGGTATTGGCTTCGCCATCACATAAA