1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGTGTTACTGGCGAGGGATCTGGTGTTATTGTTGAGGGATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttttcctaatggtttcatgttttcttttcactttgtgtgtcttaactcaaatggttggttgatctttgactgaatgcaacctgttcttcag
species | Glycine max |
transcript | GLYMA06G17930.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|7588414|gb|AW704210.1|AW704210
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|16106028|gb|BI893768.1|BI893768
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTCGTTCGGGGAAEST: gi|213617811|gb|DB959395.1|DB959395
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|208187245|gb|GD982167.1|GD982167
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|192328314|gb|FK020025.1|FK020025
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGTTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|9259946|gb|BE348093.1|BE348093
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|298194444|gb|HO041092.1|HO041092
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|208274596|gb|GE070230.1|GE070230
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|207732416|gb|GD708575.1|GD708575
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGAEST: gi|18040877|gb|BM309171.1|BM309171
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|13790786|gb|BG653377.1|BG653377
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|208326000|gb|GE121026.1|GE121026
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|7232756|gb|AW568109.1|AW568109
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|193377081|gb|FK342718.1|FK342718
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|207710944|gb|GD694008.1|GD694008
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTACTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGTTACTGGCGAGGGATCTGGTGTTATTGTTGAGGGATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttttcctaatggtttcatgttttcttttcactttgtgtgtcttaactcaaatggttggttgatctttgactgaatgcaacctgttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG