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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGgtataccttcaatatactctttttattttcctagttacttcaccttaattattcatcattagctatgtacaatatgtatactaacaagctagctatgcctctaattttatgcag

Basic information

species Glycine max
transcript GLYMA06G17420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17420.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g33580.1 (Oryza sativa), 5'ss of exon 4
GTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGgtataccttcaatatactctttttattttcctagttacttcaccttaattattcatcattagctatgtacaatatgtatactaacaagctagctatgcctctaattttatgcag
|| ||||||||||| || || |||||||| || ||||| ||||| ||||| |||||||| ||||||||||||     | || ||        ||       |             ||   ||  |  ||||||||       |  ||| ||| |   ||   | || | |             
GTCACTGGAAAGGCTCTCATTTTGGATGAGATCATCAACTATGTGCAGTCCTTACAGAACCAAGTTGAGgtaa----ttaacatgactagaatacaaaaaaaaaattaaaggtacaagagtttttgcttagctata------acatattctacct--ctgattgtgacacag-----------

upper sequence: GLYMA06G17420.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g42470.1 (Oryza sativa), 5'ss of exon 4
GTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGgtataccttcaatatactctttttattttcctagttacttcaccttaattattcatcattagctatgtacaatatgtatactaacaagctagctatgcctctaattttatgcag
|| ||||||||||| || || |||||||| || ||||| ||||| ||||| || ||||| |||||||||||| ||    || | |     |  |       ||| |    || | | || |  |     | || || |||  ||| | | |  |    | | | || || ||   |  |||||
GTTACTGGAAAGGCTCTCATTTTGGATGAGATCATCAACTATGTACAGTCGTTGCAGAACCAAGTTGAGgtacactaaaaaaaaa-----taaaaaaaagaagtaat---acttcatttttgaa-----aactttggacaggatg-acattttc---tttgttttgtctata---tggtgcag

upper sequence: GLYMA06G17420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G882527_T04 (Zea mays), 5'ss of exon 4
GTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGgtataccttcaatatactctttttattttcctagttacttcaccttaattattcatcattagctatgtacaat--atgtatactaacaagctagctatgcctctaattttatgcag
|| |||||||||||||| ||  ||||||| || ||||| ||||| |||||  | ||||| |||||||||||| |     || | |        |       ||  | || |   | | |  | |  ||  |  |  |  |    |     | |  |||   |  ||  |||     ||| | |||
GTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAGgtaaaaaaagaaaaaaaaagcaggagccatgaag--aattaatactcagtgctaaaaatgtggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcag

upper sequence: GLYMA06G17420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G882527_T01 (Zea mays), 5'ss of exon 1
-------------------------------GTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGgtataccttcaatatactctttttattttcctagttacttcaccttaattattcatcattagctatgtacaat--atgtatactaacaagctagctatgcctctaattttatgcag
                               || |||||||||||||| ||  ||||||| || ||||| ||||| |||||  | ||||| |||||||||||| |     || | |        |       ||  | || |   | | |  | |  ||  |  |  |  |    |     | |  |||   |  ||  |||     ||| | |||
AGAAGGAACAAATGTGCTTTTTTTTGGACAGGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAGgtaaaaaaagaaaaaaaaagcaggagccatgaag--aattaatactcagtgctaaaaatgtggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198903|gb|HO042266.1|HO042266
EST:     TGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGCTGAG                         TTCTTGTCAATGAAGCTTGCTTCGGTGAATCCCATGTTTTATGACTTGGCA
genomic: TGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGgtataccttc ... ttttatgcagTTCTTGTCAATGAAGCTTGCTTCGGTGAATCCCATGTTTTATGACTTGGCA