1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaataaacctgatataatttcagttgtcagtttatggtagttagctgtaacactgaccagagattatgttatgcag
species | Glycine max |
transcript | GLYMA06G15680.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|298170767|gb|HO015743.1|HO015743
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|192322981|gb|FK016712.1|FK016712
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|192306136|gb|FG993698.1|FG993698
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|22927036|gb|BU544175.1|BU544175
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|151396812|gb|EV266685.1|EV266685
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCGGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|192306137|gb|FG993699.1|FG993699
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|192317271|gb|FK010502.1|FK010502
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|298174884|gb|HO014801.1|HO014801
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTT-TT-ACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|151407106|gb|EV276921.1|EV276921
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|151395463|gb|EV265340.1|EV265340
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|192317270|gb|FK010501.1|FK010501
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|192299353|gb|FG990749.1|FG990749
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|7588869|gb|AW704655.1|AW704655
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTGTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCNGACCCGTATTCGAGTGGGEST: gi|58020226|gb|CX706968.1|CX706968
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA GGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
genomic: GGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGGGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAAgtaagtaataaacctgatataatttcagttgtcagtttatggtagttagctgtaacactgaccagagattatgttatgcag
- - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - GAGATG