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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttctcctgctttggaattttttttccattgattgaggtttgattagtctacttactctttttgcaatgcgtgattattcag

Basic information

species Glycine max
transcript GLYMA06G15510.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406343|gb|EV276158.1|EV276158
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|213614361|gb|DB966963.1|DB966963
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|298181786|gb|HO025961.1|HO025961
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTG
EST: gi|19271025|gb|BM887281.1|BM887281
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|16284806|gb|BI946280.1|BI946280
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTGTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTAGGGGATTACTTGGCCGATAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|298173478|gb|HO016814.1|HO016814
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTA
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTA
EST: gi|16996720|gb|BM086092.1|BM086092
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|16348135|gb|BI973730.1|BI973730
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|15589927|gb|BI674543.1|BI674543
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|209727965|gb|BW666685.1|BW666685
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|16283929|gb|BI945815.1|BI945815
EST:     CAATACAGTGTTTCCTTGGCTG-TCTTGGAATTAGAAGTTTGAGTATCAT                         TACGTCTAACTGGAGATGTAAGATGGATCTG
genomic: CAATACAGTGTTTCCTTG-CTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTG
EST: gi|19347243|gb|BM892123.1|BM892123
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
EST: gi|16283309|gb|BI945483.1|BI945483
EST:     TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gattattcagTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGgttctgttctcctgctttggaattttttttccattgattgaggtttgattagtctacttactctttttgcaatgcgtgattattcag

- - - - - - - - - - - - - - - - - - - - - - AGAAGT