Sequence
atgc intronic sequence ATGC exonic sequenceTGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgtatgtctgcattttattattcccttttgaaagtattatgttttgtctgtcttttcttgtttgtaataatgcattagtgatttgatgatctgggctcttatttaagcgagtgttcatatgaatttgcag
Basic information
species | Glycine max |
transcript | GLYMA06G15350.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 4
TGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgtatgtctgcattttattatt----cccttttgaaagtattatgttttgtctgtctt-ttcttgtttgtaataatgcattagtgatttgatgatctgggctcttatttaagcgagtgttcatatgaatttgcag
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TGATATTGAATCTGCTATCAAAACGTACCACATGATGTCTCAGCGCTGGTTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCACTCCAAGGCCTCAAgta-atatgcttcctaccattgaagtccaatttggattattaaaaatggtctcttatgctcctctctgtttta-tgcag-------------------------------------------------------
upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 4
TGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgtatgtctgcattttatta------ttcccttttgaaagtattatgttttgtctgtcttttcttgtttgtaataatgcattagtgatttgatgatctgggctcttatttaagcgagtgttcatatgaatttgcag
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TGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAAgtac-tgcacatttgaccagaaaaatcctagtcttggactctgaaattgcttgcttactcttttattctctgcaatgcag-------------------------------------------------------
upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 4
TGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgta-tgtct-gcattttattat----tcccttttgaaagtattatgttttgtctgtcttttcttgtttgtaataatgcattagtgatttgatgatctgggctcttatttaagcgagtgttcatatgaatttgcag
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AGACATTGAGTCTGCCATTAGGACGTACCATCTGATGTCCCAGCGCTGGTTTACACATGCATCACCAACACTTTTCAACGCTGGCACACCGAGGCCCCAAgtactgtcttgcttcctgccagacgatgtcattgtgggttgaaattgtttacttactgtttcttttctgtgatgcag----------------------------------------------------------
upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
TGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgtatgtct-----gcat----------tttattattcccttttgaaagtattatgttttgtctgtcttttcttgtt---tgtaataatgcatta-gtgatttgatgatctgggctcttatttaagcgagtgttcatatgaatttgcag----------------------------
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TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaac-agtgtacattggtctttgctaatttctgtgttctgttatgtgctgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208090328|gb|GD885349.1|GD885349EST: TCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAA CTGAGTAGTTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGGATA
genomic: TCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgtatgtctgc ... gaatttgcagCTGAGTAGTTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgtatgtctgcattttattattcccttttgaaagtattatgttttgtctgtcttttcttgtttgtaataatgcattagtgatttgatgatctgggctcttatttaagcgagtgttcatatgaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA