1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGTCGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATTAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGgtccgtgtgaattttaaatgtgtgatggattttattatgtacctttggtttttgtatgtctctagtaattgaaattagctatcagttgacttacatgattggtttccttaacag
species | Glycine max |
transcript | GLYMA06G15330.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGAACAGGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCG GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTEST: gi|7692920|gb|AW761019.1|AW761019
genomic: AAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGgtccgtgtga ... tccttaacagGTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTT
EST: AAGAACAAGGACTTATAGCTGAAGCTGCTGATTGGATGCAGGAAATTGCG GTGGAAACGTTTGGCGCCATGGCTAAGACTGAGAAAATCGCATTCATTCTTEST: gi|26048081|gb|CA784677.1|CA784677
genomic: AAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGgtccgtgtga ... tccttaacagGTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTT
EST: AAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCG GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTEST: gi|26048108|gb|CA784697.1|CA784697
genomic: AAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGgtccgtgtga ... tccttaacagGTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTT
EST: AAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCG GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTT
genomic: AAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGgtccgtgtga ... tccttaacagGTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATTAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGgtccgtgtgaattttaaatgtgtgatggattttattatgtacctttggtttttgtatgtctctagtaattgaaattagctatcagttgacttacatgattggtttccttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA