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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtagcttcctttctttttctgacagacaaaatagcatatatttttcaagtatagtttcctcctacaatcatctgatagtatttaacttatttcaag

Basic information

species Glycine max
transcript GLYMA06G14590.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193696981|gb|FK638851.1|FK638851
EST:     AAGAGGCCTATTAACTTCCGTCGGCCG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AAGAGGCC-A-TAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|37994656|gb|CF806311.1|CF806311
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|9819498|gb|BE555011.1|BE555011
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTNTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193707462|gb|FK647188.1|FK647188
EST:     AAGAGGCCATAACTTCCGTCGGCCG                         GGTCAAATG-TAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|207794422|gb|GD764746.1|GD764746
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193722599|gb|FK662173.1|FK662173
EST:     AAGAGGCCATAACTTCCGTCGGCCG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193391937|gb|FK355618.1|FK355618
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGC
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGC
EST: gi|207787365|gb|GD756762.1|GD756762
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATAACTCTGCTGCTGTATCGTGCTTT
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTAT-ACTCTGCTGCTGTATCGTGCTTT
EST: gi|193393906|gb|FK358499.1|FK358499
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|207780436|gb|GD751671.1|GD751671
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193671928|gb|FK616702.1|FK616702
EST:     AAGAGGCCATAACTTCCGTCGGCCG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|207701528|gb|GD682857.1|GD682857
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|9819411|gb|BE554924.1|BE554924
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCT
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCT
EST: gi|51342137|gb|CO983398.1|CO983398
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193413170|gb|FK379085.1|FK379085
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTAGAGTATACTCTGCTGCTGTATCGTGCTTT
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATT-GAGTATACTCTGCTGCTGTATCGTGCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtagcttcctttctttttctgacagacaaaatagcatatatttttcaagtatagtttcctcctacaatcatctgatagtatttaacttatttcaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG