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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacgattactatttgtttatgatacgtgctttcttcttaattatggtggattgtgttatgaaattgacaccttgttcttggctatag

Basic information

species Glycine max
transcript GLYMA06G14050.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193572001|gb|FK529158.1|FK529158
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTAT
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTAT
EST: gi|193542464|gb|FK497570.1|FK497570
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|207681195|gb|GD661942.1|GD661942
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|208297539|gb|GE092810.1|GE092810
EST:     GTTACTGAAGAGCAGCTGGCAGCCCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTGTGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|193387164|gb|FK352959.1|FK352959
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|208149690|gb|GD947694.1|GD947694
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|193378815|gb|FK345156.1|FK345156
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|208284307|gb|GE083707.1|GE083707
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|193607198|gb|FK560079.1|FK560079
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTAT
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTAT
EST: gi|151397590|gb|EV267463.1|EV267463
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|21677144|gb|BQ629495.1|BQ629495
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|208291734|gb|GE090630.1|GE090630
EST:     GTTACTGAAGAGCGGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|15661924|gb|BI699295.1|BI699295
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: gi|254343883|gb|GR857639.1|GR857639
EST:     GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG                         GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacgattactatttgtttatgatacgtgctttcttcttaattatggtggattgtgttatgaaattgacaccttgttcttggctatag

- - CTGAAG
- -  TGAAGA
- - - - AGAGCA
- - - -  GAGCAG
- - - - -  GCAGCT
- - - - - - CAGCTG
- - - - - - - - - GCAGCT
- - - - - - - - -  CAGCTC