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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCGGCTATCAACTTATAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCAATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCGgtatgcattcttagtttcttattacacctggtgattaatgttttgttttaggcagaatatggttcagtggctttatttctttagttttatttcatgtaac...

Basic information

species Glycine max
transcript GLYMA06G13100.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13100.3 (Glycine max), 5'ss of exon 4
lower sequence: AT5G24120.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTTCGGCTATCAACTTATAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCAATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCGgtatgcattcttagtttcttattacacctggtgattaatgttttgttttaggcagaatatggttcagtggctttatttctttagttttatttcatgtaac
 ||||| || || |||||| ||||||||||||| |||||||| ||||| || ||||||||    ||||||||||| ||||| || ||||||||||||||||| ||  | | ||   |||| |  | | |  | |  |||  |||||||| | ||||  ||  | || |   |    ||  ||      |||         
GTTTCGTCTTTCGACTTATGGTTTGTTTTGGATTAGACATGCCATCATACGGTCAATGACAACTTCAAACTTCACTCGTGTCCCATTTGGACTTGAATCGgtttgt-tacctaccctctt-tggctctttttcaaaaatagtttgtttttg-cagag-atcttaca-tatttcctctttgttgaaaccattcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529299|gb|EH257433.1|EH257433
EST:     GTTCAATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCG                         GTTCGAGCAGAAATTCAAAAAGCTAAAACTGAGTTAACATTTGAGCTTCAG
genomic: GTTCAATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCGgtatgcattc ... ttttgagcagGTTCGAGCAGAAATTCAAAAAGCTAAAACTGAGTTAACATTTGAGCTTCAG
EST: gi|19453504|gb|BM954914.1|BM954914
EST:     GTTCAATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCG                         GTTCGAGCAGAAATTCAAAAAGCTAAAACTGAGTTAACATTTGAGCTTCAG
genomic: GTTCAATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCGgtatgcattc ... ttttgagcagGTTCGAGCAGAAATTCAAAAAGCTAAAACTGAGTTAACATTTGAGCTTCAG