Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGCCTTATTCAGgtaatttttctctggtggtggtaaaatttgtgttaatctactgtgtttggtggtgggaaagattagatttagagcacatgttttaatgatgtgatgtacaaatgagctgggtctggtattgaagttttttattaattaatttttgaaaacgtactgcatgacctattgttaactttattatctcatgtttgcatgcacag

Basic information

species Glycine max
transcript GLYMA06G12320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12320.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g08980.1 (Oryza sativa), 5'ss of exon 4
TGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGCCTTATTCAGgtaatttttctctggtggtggtaaaatttgtgtta-atctactgtgtttggtggtgggaaagattagatttagagcacatgttttaatgatgtgatgtacaaatgagctgggtctggtattgaagttttttattaattaatttttgaaaacgtactgcatgacctattgttaactttattatctcatgtttgcatgcacag
| || ||||| ||||||||||| || || || ||||||||||||||||| ||||| ||||||||  | ||||| || || || || ||||||||| |     | |||||     ||   || ||||  |  | ||     |     | |     |||  | |   | |   |  | | |   | |  |||| |||| |   | | |    ||  ||  ||       || | ||| ||  |   |  |   | || |||  | ||                            
TTGTGACTGTAAATGATTATTTGGCACAGCGAGATGCTGAATGGATGGGTCGTGTGCATCGTTTTCTTGGTCTTTCCGTGGGTCTAATTCAGgtattgacattatggtga--acaatgcttttgttgtactttctacaccttcctcttgctggcattgaaat---acctggtagtgttactttattttgtagaaatcattggaggcaaacatataacatt-------ataactttgtgtcactctgtttttttacatatcctcaag---------------------------

upper sequence: GLYMA06G12320.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G090086_T01 (Zea mays), 5'ss of exon 5
TGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGCCTTATTCAGgtaatttttctctggtggtggtaaaatttgtgttaatctactgtgtttggtggtgggaaagattagatttagagcacatgttttaatgatgtgatgtacaaatgagctgggtctggtattgaagttttttattaattaatttttgaaaacgta-ctgcatgacctattgttaactttattatctcatgtttg---catgcacag
|||| ||||| ||||||||||| || || |||||||||||||||||||| ||||||||||| ||  | |||||  ||||||| || |||||||||                  || |  || |  |||   ||| |||| |    |   |  | ||    ||| ||  ||  || |     |  |       ||  | |||    || ||  | || || ||   |||||      ||| | | | |   || ||| ||  ||  || |  | |   || | ||    ||||| ||
TGGTGACTGTAAATGATTATTTGGCACAGCGTGATGCTGAATGGATGGGTCGTGTTCATCGCTTTCTCGGTCTTACTGTTGGTCTGATTCAGgta------------------tatacattattataa---actatgttcga--ataacagtgtttcacattacagatcacattctgccagttcgg------aaacacctgatgttgctacagtagattattg--aattagca---gaacaggcaaccatataacc-atcttttgctcttcttttgtatatatggcatatgcatag

upper sequence: GLYMA06G12320.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g01860.t01 (Vitis vinifera), 5'ss of exon 6
TGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGCCTTATTCAGgta--atttttctctggtg-gtggtaaaatttgtgttaatctactgtgtttggtggtgggaaagattagatttagagcacatgttttaatgatgtgatgtacaaatgagctgggtctggtattgaagttttttattaattaatttttgaaaacgtactgcatgacctattgttaactttattatctcatgtttgcatgcacag
|||||||||||||||||||| | || |||||||||||||| |||||||| ||||||||||||||| ||||||| || || || |||||||||||   ||||    || ||| ||  ||||| ||   | ||  ||  || |||    ||       | |  ||| |  |     ||      ||     ||||                                                                                                      
TGGTAACTGTCAATGATTATCTGGCCCAACGTGATGCTGAGTGGATGGGTCGTGTTCATCGTTTCCTAGGTCTTTCAGTGGGTCTTATTCAGgtgtgatttcctgcttgtgagtcataaaaatt---tcaagttatggttttt--ctgtccttttcaatgcattcattgggtgggtcaattggacaacttgtatcgt--------------------------------------------------------------------------------------------------

upper sequence: GLYMA06G12320.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ20638 (Selaginella moellendorffii), 5'ss of exon 6
TGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGCCTTATTCAGgtaatttttctctggtggtggtaaaatttgtgttaatctactgtgtttggtggtgggaaagattagatttagagcacatgttttaatgatgtgatgtacaaatgagctgggtctggtattgaagttttttattaattaatttttgaaaacgtactgcatgacctattgttaactttattatctcatgtttgcatgcacag
|| |||||||||| |||||| |||||||||| || || ||||||||||| |   || |    ||||| || || |||||||||||| |  |||||||| |    |    |      ||||    ||  | |  || | || ||  |    |                                                                                                                                             
TGATAACTGTCAACGATTATCTAGCTCAACGAGACGCGGAATGGATGGGCCAAATTTACAAGTTCTTGGGGCTTTCTGTTGGCCTTGTGAAGgtaattctggcttacctg------aattgtcttttctttgttgagattagtctttcctatag------------------------------------------------------------------------------------------------------------------------------------------