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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGTATTGTGATAACTCATTTATAAGAGTTGTGGAGGGGGCAGTTGATGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAGgtttttcttctttctttatcattattctagtttgaatcccttctcagggactaaacgtacaaattaatgcctaatttgaacataaaacagcaagaaaattaaatgaataattcttggattgttag

Basic information

species Glycine max
transcript GLYMA06G12010.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12010.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g08300.1 (Oryza sativa), 5'ss of exon 4
GAGAAGTATTGTGATAACTCATTTATAAGAGTTGTGGAGGGGGCAGTTGATGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAGgtt--tttcttctttc------tttatcattattctagtttgaatcccttctcagggactaaacgtacaaattaatgcctaatttgaacataaa---------acagcaagaaaattaaa---tgaataattctt-ggattgttag
    | ||   ||||| ||| |  |||| ||| |||||||| |  |||   |||||||||||||| ||  | ||||||||||| ||||| |||||||||||||   ||||| | |       |||  || ||| ||| |     |   || |    |  | | |       |   |  |||| ||   |||  |          | |  |  |   ||||   |  ||| | ||| | |     ||
CCTGAATACGTTGATAGCTCTTGCATAAAAGTGGTGGAGGGAGGCGTTCCAGAAACAACCGCACTCTTAGAACAAAAGTGGGATAAGATCTTCTACACAGgttaacttcttatcttgcatagttttccagtatgctaatgatttttttttttttttgctttagctgctgggtacttcactaaattattcatccattctgttttgctgttaagacgctaaagtgtagatattcctttgaaactgcag

upper sequence: GLYMA06G12010.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G44170.3 (Arabidopsis thaliana), 5'ss of exon 4
GAGAAGTATTGTGATAACTCATTTATAAGAGTTGTGGAGGGGGCAGTTGATGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAGgtttttcttctttctttatcattattctagtttgaatcccttctcagggactaaacgtacaaattaatgcctaatttgaacataaaacagcaagaaaattaaatgaataattcttggattgttag
||  |||||  ||||   ||     |  ||||||| || || || |||   |||||||  || ||  |  |||| |||||||||||||| ||||||||||||| || ||   ||    | ||   | |  ||| ||     | |||     | |   | |    || ||  |  || |                                               
GAACAGTATCTTGATCCTTCTGCGGTGCGAGTTGTCGAAGGAGCTGTTACCGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAGgttcttattaactcgacttaatgtgtttcctttcaa----atatcaacatgtgacatttcccgctattgtgtggttag-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319120|gb|GR828848.1|GR828848
EST:     TGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAG                         GCAATGGAAAAGTGGGAAGAATAGTGATGACTGCTGCTGCAAAACACCTTA
genomic: TGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAGgtttttcttc ... ggattgttagGCAATGGAAAAGTGGGAAGAATAGTGATGACTGCTGCTGCAAAACACCTTA
EST: gi|254324505|gb|GR833930.1|GR833930
EST:     TGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAG                         GCAATGGAAAAGTGGGAAGAATAGTGATGACTGCTGCTGCAAAACACCTTA
genomic: TGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAGgtttttcttc ... ggattgttagGCAATGGAAAAGTGGGAAGAATAGTGATGACTGCTGCTGCAAAACACCTTA