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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGGACTTTTGGGCAAACACTGGAGGAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGgtaagacagtagtagatcatgattttcttaatattgcattataaactaagtttatatatacaacaatattgtttcag

Basic information

species Glycine max
transcript GLYMA06G11540.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGATGGACTTTTGGGCAAACACTGGAGGAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGgtaagacagtagtagatcatgattttcttaat------attgcattataaactaagtttatatatacaacaatattgtttcag
| |||||| | ||||| ||||| |||||||| |||||  |  | || ||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||||   | || |  ||  | |||||||| ||       ||   | |||    || || ||  ||| || ||     || |||
TAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGATTGATCTTTAACTGCACTTTTCTTCTCTTTGGATCTGTTATTCAGCTCATTGCTTGTGCTAGgtaaattaataatcaatgttcattttctttattatatggttttttcatattgaaaattaattaatataaaaaatgatttgcag

upper sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 3
TTGATGGACTTTTGGGCAAACACTGGAGGAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGgtaagac----agtagtagatcatgattttcttaatattgcattataaactaagtttatatatacaacaatattgtttcag-------------------------------------------
||||||| |||||||| || |||||||||||| | || ||  |||||||||| ||||||||||| ||||| || || || || || ||||| ||||||||||||  |    ||  | |    |  ||  |   ||| |  |||||||   |  ||||  | | || |  | ||  | |                                              
TTGATGGGCTTTTGGGGAAGCACTGGAGGAATGTAGGCCTACTTTTCAACTGCACTTTCCTTCTCTTTGGCTCCGTGATACAGCTGATTGCCTGTGCAAGgtaaacccaaaaggggaaaggaaaaatcattacaatgt-acattatat-ttctgtttggacagacgaatacatcatgtatacatactggttaatttttcctcaatttccattgatatgctgcag